Literature DB >> 27929146

Reactivity of the nitrogen-centered tryptophanyl radical in the catalysis by the radical SAM enzyme NosL.

Haocheng Qianzhu1, Wenjuan Ji2, Xinjian Ji2, Leixia Chu3, Chuchu Guo2, Wei Lu2, Wei Ding4, Jiangtao Gao3, Qi Zhang2.   

Abstract

The radical SAM tryptophan (Trp) lyase NosL involved in nosiheptide biosynthesis catalyzes two parallel reactions, converting l-Trp to 3-methyl-2-indolic acid (MIA) and to dehydroglycine and 3-methylindole, respectively. The two parallel reactions diverge from a nitrogen-centered tryptophanyl radical intermediate. Here we report an investigation on the intrinsic reactivity of the tryptophanyl radical using a chemical model study and DFT calculations. The kinetics of the formation and fragmentation of this nitrogen-centered radical in NosL catalysis were also studied in detail. Our analysis explains the intriguing catalytic promiscuity of NosL and highlights the remarkable role this enzyme plays in achieving an energetically highly unfavorable transformation.

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Year:  2016        PMID: 27929146     DOI: 10.1039/c6cc08869d

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN: 1359-7345            Impact factor:   6.222


  6 in total

1.  Mechanistic Studies on Tryptophan Lyase (NosL): Identification of Cyanide as a Reaction Product.

Authors:  Dhananjay M Bhandari; Dmytro Fedoseyenko; Tadhg P Begley
Journal:  J Am Chem Soc       Date:  2018-01-02       Impact factor: 15.419

2.  ICBS 2017 in Shanghai-Illuminating Life with Chemical Innovation.

Authors:  Qi Zhang; Jingyu Zhang; Evripidis Gavathiotis
Journal:  ACS Chem Biol       Date:  2018-05-02       Impact factor: 5.100

Review 3.  Radical S-Adenosylmethionine Enzymes Involved in RiPP Biosynthesis.

Authors:  Nilkamal Mahanta; Graham A Hudson; Douglas A Mitchell
Journal:  Biochemistry       Date:  2017-09-22       Impact factor: 3.162

Review 4.  Computational Approaches: An Underutilized Tool in the Quest to Elucidate Radical SAM Dynamics.

Authors:  Tamra C Blue; Katherine M Davis
Journal:  Molecules       Date:  2021-04-29       Impact factor: 4.411

5.  Biosynthesis of the nosiheptide indole side ring centers on a cryptic carrier protein NosJ.

Authors:  Wei Ding; Wenjuan Ji; Yujie Wu; Runze Wu; Wan-Qiu Liu; Tianlu Mo; Junfeng Zhao; Xiaoyan Ma; Wei Zhang; Ping Xu; Zixin Deng; Boping Tang; Yi Yu; Qi Zhang
Journal:  Nat Commun       Date:  2017-09-05       Impact factor: 14.919

Review 6.  Radical SAM Enzymes in the Biosynthesis of Ribosomally Synthesized and Post-translationally Modified Peptides (RiPPs).

Authors:  Alhosna Benjdia; Clémence Balty; Olivier Berteau
Journal:  Front Chem       Date:  2017-11-08       Impact factor: 5.221

  6 in total

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