Literature DB >> 27926819

A plea for linguistic accuracy - also for Candidatus taxa.

Aharon Oren1.   

Abstract

While all names of new taxa submitted to the International Journal of Systematic and Evolutionary Microbiology, either in direct submissions or in validation requests for names effectively published elsewhere, are subject to nomenclatural review to ensure that they are acceptable based on the rules of the International Code of Nomenclature of Prokaryotes, the names of Candidatus taxa have not been subjected to such a review. Formally, this was not necessary because the rank of Candidatus is not covered by the Code, and the names lack the priority afforded validly published names. However, many Candidatus taxa of different ranks are widely discussed in the scientific literature, and a proposal to incorporate the nomenclature of uncultured prokaryotes under the provisions of the Code is currently pending. Therefore, an evaluation of the names of Candidatus taxa published thus far is very timely. Out of the ~400 Candidatus names found in the literature, 120 contradict the current rules of the Code or are otherwise problematic. A list of those names of Candidatus taxa that need correction is presented here and alternative names that agree with the provisions of the Code are proposed.

Mesh:

Year:  2017        PMID: 27926819     DOI: 10.1099/ijsem.0.001715

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  10 in total

1.  Prosthetic Valve Endocarditis with Bartonella washoensis in a Human European Patient and Its Detection in Red Squirrels (Sciurus vulgaris).

Authors:  Friederike D von Loewenich; Christof Seckert; Elke Dauber; Marja J L Kik; Ankje de Vries; Hein Sprong; Katja Buschmann; Matthew L Aardema; Moritz Brandstetter
Journal:  J Clin Microbiol       Date:  2019-12-23       Impact factor: 5.948

2.  Uncultivated microbes in need of their own taxonomy.

Authors:  Konstantinos T Konstantinidis; Ramon Rosselló-Móra; Rudolf Amann
Journal:  ISME J       Date:  2017-07-21       Impact factor: 10.302

3.  Multiple origins of obligate nematode and insect symbionts by a clade of bacteria closely related to plant pathogens.

Authors:  Vincent G Martinson; Ryan M R Gawryluk; Brent E Gowen; Caitlin I Curtis; John Jaenike; Steve J Perlman
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-30       Impact factor: 11.205

4.  Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture.

Authors:  Rachel Gilroy; Anuradha Ravi; Maria Getino; Isabella Pursley; Daniel L Horton; Nabil-Fareed Alikhan; Dave Baker; Karim Gharbi; Neil Hall; Mick Watson; Evelien M Adriaenssens; Ebenezer Foster-Nyarko; Sheikh Jarju; Arss Secka; Martin Antonio; Aharon Oren; Roy R Chaudhuri; Roberto La Ragione; Falk Hildebrand; Mark J Pallen
Journal:  PeerJ       Date:  2021-04-06       Impact factor: 2.984

Review 5.  The status Candidatus for uncultured taxa of Bacteria and Archaea: SWOT analysis.

Authors:  Mark J Pallen
Journal:  Int J Syst Evol Microbiol       Date:  2021-09       Impact factor: 2.747

6.  Host-symbiont stress response to lack-of-sulfide in the giant ciliate mutualism.

Authors:  Salvador Espada-Hinojosa; Judith Drexel; Julia Kesting; Edwin Kniha; Iason Pifeas; Lukas Schuster; Jean-Marie Volland; Helena C Zambalos; Monika Bright
Journal:  PLoS One       Date:  2022-02-25       Impact factor: 3.240

Review 7.  Emerging rodent-associated Bartonella: a threat for human health?

Authors:  Maria Krügel; Nina Król; Volkhard A J Kempf; Martin Pfeffer; Anna Obiegala
Journal:  Parasit Vectors       Date:  2022-03-31       Impact factor: 3.876

Review 8.  Phytoplasma Taxonomy: Nomenclature, Classification, and Identification.

Authors:  Wei Wei; Yan Zhao
Journal:  Biology (Basel)       Date:  2022-07-26

9.  Molecular analysis of blood-associated pathogens in European wildcats (Felis silvestris silvestris) from Germany.

Authors:  Maria Sophia Unterköfler; Josef Harl; Bita Shahi Barogh; Joachim Spergser; Kristýna Hrazdilová; Franz Müller; Diana Jeschke; Ole Anders; Peter Steinbach; Hermann Ansorge; Hans-Peter Fuehrer; Mike Heddergott
Journal:  Int J Parasitol Parasites Wildl       Date:  2022-09-03       Impact factor: 2.773

Review 10.  Prokaryotic taxonomy and nomenclature in the age of big sequence data.

Authors:  Philip Hugenholtz; Maria Chuvochina; Aharon Oren; Donovan H Parks; Rochelle M Soo
Journal:  ISME J       Date:  2021-04-06       Impact factor: 10.302

  10 in total

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