Literature DB >> 27923679

Evolutionary scalpels for dissecting tumor ecosystems.

Daniel I S Rosenbloom1, Pablo G Camara2, Tim Chu2, Raul Rabadan3.   

Abstract

Amidst the growing literature on cancer genomics and intratumor heterogeneity, essential principles in evolutionary biology recur time and time again. Here we use these principles to guide the reader through major advances in cancer research, highlighting issues of "hit hard, hit early" treatment strategies, drug resistance, and metastasis. We distinguish between two frameworks for understanding heterogeneous tumors, both of which can inform treatment strategies: (1) The tumor as diverse ecosystem, a Darwinian population of sometimes-competing, sometimes-cooperating cells; (2) The tumor as tightly integrated, self-regulating organ, which may hijack developmental signals to restore functional heterogeneity after treatment. While the first framework dominates literature on cancer evolution, the second framework enjoys support as well. Throughout this review, we illustrate how mathematical models inform understanding of tumor progression and treatment outcomes. Connecting models to genomic data faces computational and technical hurdles, but high-throughput single-cell technologies show promise to clear these hurdles. This article is part of a Special Issue entitled: Evolutionary principles - heterogeneity in cancer?, edited by Dr. Robert A. Gatenby.
Copyright © 2016 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Cancer evolution; Combination therapy; Drug resistance; Genomics; Intratumor heterogeneity; Mathematical modeling

Mesh:

Substances:

Year:  2016        PMID: 27923679      PMCID: PMC5704952          DOI: 10.1016/j.bbcan.2016.11.005

Source DB:  PubMed          Journal:  Biochim Biophys Acta Rev Cancer        ISSN: 0304-419X            Impact factor:   10.680


  187 in total

Review 1.  Principles for the buffering of genetic variation.

Authors:  J L Hartman; B Garvik; L Hartwell
Journal:  Science       Date:  2001-02-09       Impact factor: 47.728

2.  Ernst Mayr: Genetics and speciation.

Authors:  William B Provine
Journal:  Genetics       Date:  2004-07       Impact factor: 4.562

3.  Plasticity in the nervous system of adult hydra. III. Conversion of neurons to expression of a vasopressin-like immunoreactivity depends on axial location.

Authors:  O Koizumi; H R Bode
Journal:  J Neurosci       Date:  1991-07       Impact factor: 6.167

4.  The cultural evolution of emergent group-level traits.

Authors:  Paul E Smaldino
Journal:  Behav Brain Sci       Date:  2014-06       Impact factor: 12.579

5.  Mutation and selection in bacterial populations: alternatives to the hypothesis of directed mutation.

Authors:  R E Lenski; M Slatkin; F J Ayala
Journal:  Proc Natl Acad Sci U S A       Date:  1989-04       Impact factor: 11.205

6.  EGFR variant heterogeneity in glioblastoma resolved through single-nucleus sequencing.

Authors:  Joshua M Francis; Cheng-Zhong Zhang; Cecile L Maire; Joonil Jung; Veronica E Manzo; Viktor A Adalsteinsson; Heather Homer; Sam Haidar; Brendan Blumenstiel; Chandra Sekhar Pedamallu; Azra H Ligon; J Christopher Love; Matthew Meyerson; Keith L Ligon
Journal:  Cancer Discov       Date:  2014-06-03       Impact factor: 39.397

7.  SNES: single nucleus exome sequencing.

Authors:  Marco L Leung; Yong Wang; Jill Waters; Nicholas E Navin
Journal:  Genome Biol       Date:  2015-03-25       Impact factor: 13.583

8.  Paracrine signaling between tumor subclones of mouse SCLC: a critical role of ETS transcription factor Pea3 in facilitating metastasis.

Authors:  Min-chul Kwon; Natalie Proost; Ji-Ying Song; Kate D Sutherland; John Zevenhoven; Anton Berns
Journal:  Genes Dev       Date:  2015-07-27       Impact factor: 11.361

9.  Complex tumor genomes inferred from single circulating tumor cells by array-CGH and next-generation sequencing.

Authors:  Ellen Heitzer; Martina Auer; Christin Gasch; Martin Pichler; Peter Ulz; Eva Maria Hoffmann; Sigurd Lax; Julie Waldispuehl-Geigl; Oliver Mauermann; Carolin Lackner; Gerald Höfler; Florian Eisner; Heinz Sill; Hellmut Samonigg; Klaus Pantel; Sabine Riethdorf; Thomas Bauernhofer; Jochen B Geigl; Michael R Speicher
Journal:  Cancer Res       Date:  2013-03-07       Impact factor: 12.701

10.  Clonal architecture of secondary acute myeloid leukemia defined by single-cell sequencing.

Authors:  Andrew E O Hughes; Vincent Magrini; Ryan Demeter; Christopher A Miller; Robert Fulton; Lucinda L Fulton; William C Eades; Kevin Elliott; Sharon Heath; Peter Westervelt; Li Ding; Donald F Conrad; Brian S White; Jin Shao; Daniel C Link; John F DiPersio; Elaine R Mardis; Richard K Wilson; Timothy J Ley; Matthew J Walter; Timothy A Graubert
Journal:  PLoS Genet       Date:  2014-07-10       Impact factor: 5.917

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  7 in total

1.  Cancer Ecology and Evolution: Positive interactions and system vulnerability.

Authors:  Frederick R Adler; Deborah M Gordon
Journal:  Curr Opin Syst Biol       Date:  2019-09-11

Review 2.  Intratumoral Heterogeneity: More Than Just Mutations.

Authors:  Kunihiko Hinohara; Kornelia Polyak
Journal:  Trends Cell Biol       Date:  2019-04-12       Impact factor: 20.808

Review 3.  Tumour heterogeneity and the evolutionary trade-offs of cancer.

Authors:  Jean Hausser; Uri Alon
Journal:  Nat Rev Cancer       Date:  2020-02-24       Impact factor: 60.716

Review 4.  Modeling the process of human tumorigenesis.

Authors:  Sneha Balani; Long V Nguyen; Connie J Eaves
Journal:  Nat Commun       Date:  2017-05-25       Impact factor: 14.919

Review 5.  The Role for Myc in Coordinating Glycolysis, Oxidative Phosphorylation, Glutaminolysis, and Fatty Acid Metabolism in Normal and Neoplastic Tissues.

Authors:  Eric S Goetzman; Edward V Prochownik
Journal:  Front Endocrinol (Lausanne)       Date:  2018-04-12       Impact factor: 5.555

6.  Doxorubicin treatment modulates chemoresistance and affects the cell cycle in two canine mammary tumour cell lines.

Authors:  Michela Levi; Roberta Salaroli; Federico Parenti; Raffaella De Maria; Augusta Zannoni; Chiara Bernardini; Cecilia Gola; Antonio Brocco; Asia Marangio; Cinzia Benazzi; Luisa Vera Muscatello; Barbara Brunetti; Monica Forni; Giuseppe Sarli
Journal:  BMC Vet Res       Date:  2021-01-18       Impact factor: 2.741

7.  Single-cell RNA sequencing reveals the tumor microenvironment and facilitates strategic choices to circumvent treatment failure in a chemorefractory bladder cancer patient.

Authors:  Hye Won Lee; Woosung Chung; Hae-Ock Lee; Da Eun Jeong; Areum Jo; Joung Eun Lim; Jeong Hee Hong; Do-Hyun Nam; Byong Chang Jeong; Se Hoon Park; Kyeung-Min Joo; Woong-Yang Park
Journal:  Genome Med       Date:  2020-05-27       Impact factor: 11.117

  7 in total

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