Literature DB >> 27920929

Crystal structure of methyl 4-(4-hy-droxy-phen-yl)-6-methyl-2-oxo-1,2,3,4-tetra-hydro-pyrimidine-5-carboxyl-ate monohydrate.

Keshab M Bairagi1, Katharigatta N Venugopala2, Pradip Kumar Mondal3, Bharti Odhav2, Susanta K Nayak1.   

Abstract

The title hydrate, C13H14N2O4·H2O, crystallizes with two formula units in the asymmetric unit (Z' = 2). The dihedral angles between the planes of the tetra-hydro-pyrimidine ring and the 4-hy-droxy-phenyl ring and ester group are 86.78 (4) and 6.81 (6)°, respectively, for one mol-ecule and 89.35 (4) and 3.02 (4)° for the other. In the crystal, the organic mol-ecules form a dimer, linked by a pair of N-H⋯O hydrogen bonds. The hydroxy groups of the organic mol-ecules donate O-H⋯O hydrogen bonds to water mol-ecules. Further, the hy-droxy group accepts N-H⋯O hydrogen bonds from amides whereas the water mol-ecules donate O-H⋯O hydrogen bonds to the both the amide and ester carbonyl groups. Other weak inter-actions, including C-H⋯O, C-H⋯π and π-π, further consolidate the packing, generating a three-dimensional network.

Entities:  

Keywords:  DHPM derivative; Z′ = 2; crystal structure; hydrogen bonding; monohydrate

Year:  2016        PMID: 27920929      PMCID: PMC5120719          DOI: 10.1107/S2056989016013359

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Di­hydro­pyrimidine (DHPM) derivatives are used in the treatment of disease as anti­viral, anti­tumor, anti­bacterial and anti­malarial agents, as first reported by the Italian chemist Pietro Biginelli in 1893 [Kappe (2000 ▸), Nayak et al. (2010 ▸) and references therein]. We have been working on the synthesis of various DHPM derivatives for better biological activities (Narayanaswamy et al., 2013 ▸; Nayak et al., 2011 ▸) and a wide range of applications (Nayak et al., 2009 ▸, 2010 ▸). Here, we report the synthesis and single-crystal structure of the title compound, (I).

Structural commentary

Compound (I) crystallizes as a monohydrate with two formula units in the asymmetric unit (Z′ = 2), which may be supported by the formation of hydrogen bonds between the hy­droxy­phenyl group and the water mol­ecule and dimer formation through N—H⋯O hydrogen bonds (Fig. 1 ▸). The dihedral angles between the planes of the six-membered tetra­hydro­pyrimidine ring with its 4-hy­droxy­phenyl and ester substituents are 86.78 (4) and 6.81 (6)°, respectively, for the N1-containing mol­ecule and 89.35 (4)° and 3.02 (4)°, respectively, for the other.
Figure 1

The asymmetric unit of the title compound with 50% probability ellipsoids. The double-dashed lines indicate hydrogen bonds.

Supra­molecular features

In the crystal of (I), the DHPM mol­ecules form dimers through N—H⋯O hydrogen bonds with an (8) graph-set motif (Fig. 2 ▸). The hy­droxy groups of the di­hydro­pyrimidine mol­ecules donate O—H⋯O hydrogen bonds to water mol­ecules, which may explain the preference for the monohydrated crystalline form. Further, the hy­droxy group accepts N—H⋯O hydrogen bonds from amide groups whereas the water mol­ecule donates O—H⋯O hydrogen bonds to the both the amide and ester carbonyl groups (Table 1 ▸). The key role of the water mol­ecule in the hydrogen-bonding network is shown in Fig. 3 ▸.
Figure 2

Crystal structure of title compound showing the dimers formed by N—H⋯O hydrogen bonds as well as the links to the water mol­ecules, which donate O—H⋯O hydrogen bonds to the ester groups.

Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C8–C13 and C21–C26 rings, respectively.

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N⋯O60.878 (19)2.10 (2)2.9762 (16)173.1 (17)
N3—H3N⋯O10.88 (2)1.98 (2)2.8626 (16)174 (2)
N2—H2N⋯O9i 0.89 (2)2.02 (2)2.8971 (19)170.0 (18)
N4—H4N⋯O4ii 0.87 (2)2.13 (2)2.9738 (19)163.4 (18)
O4—H1O⋯O50.87 (2)1.78 (2)2.6473 (16)175 (2)
O9—H2O⋯O100.90 (2)1.73 (2)2.6189 (17)174.7 (19)
O5—H4O⋯O2iii 0.84 (2)2.15 (2)2.8549 (19)141 (2)
O5—H3O⋯O1iv 0.91 (3)1.91 (3)2.786 (2)162 (2)
C20—H20C⋯O5iv 1.00 (2)2.56 (2)3.332 (2)133.7 (17)
C26—H26⋯O3v 0.971 (17)2.571 (18)3.4607 (18)152.4 (14)
C6—H6BCg2vi 0.989 (19)2.70 (2)3.392 (2)127.1 (16)
C19—H19CCg1vii 0.98 (2)2.84 (2)3.395 (2)116.5 (16)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .

Figure 3

Three-dimensional crystal structure of the title compound showing the role of the water mol­ecules in the hydrogen-bonding network.

Weak inter­actions including C—H⋯O, C—H⋯π and π⋯π [Cg1⋯Cg2(2 − x, 1 − y, 1 − z) = 3.652 (1) Å; Cg1 and Cg2 are the centroids of the C8–C13 and C21–C26 rings, respectively] help to consolidate the packing and a three-dimensional network arises.

Database survey

A search of the Cambridge structural Database (CSD) (Conquest Version 1.17; Groom et al., 2016 ▸) for methyl 4-(4-hy­droxy­phen­yl)-6-methyl 2-oxo-1,2,3,4-tetra­hydro­pyrimidine-5-carboxyl­ate gave no hits; however, the crystal structures of sixteen hy­droxy­phenyl-substituted DHPM derivatives were found. These structures include four 2-hy­droxy­phenyl-substituted DHPM mol­ecules, one 3-hy­droxy-substituted and eleven 4-hy­droxy­phenyl-substituted DHPM mol­ecules. It is inter­esting to note that five of the 4-hy­droxy­phenyl-substituted DHPM mol­ecules prefer to crystallize in a hydrated form (ZOHFIN: Vishnevskii et al. 2014 ▸; VOJDOO: Das et al., 2008 ▸; VOJDOO01: Nayak et al., 2009 ▸; POWXIJ: Thenmozhi et al., 2009 ▸; XISMES: Liu et al., 2008 ▸). However, of these only ethyl 4-(4-hy­droxy­phen­yl)-6-methyl-2-oxo-1,2,3,4-tetra­hydro­pyrimidine-5 carboxyl­ate (VOJDOO: Das et al., 2008 ▸) crystallizes with a higher formula unit (Z′ > 1), i.e. its structure has three formula units in the asymmetric unit (Z′ = 3) in the monohydrated form. Hence, the title compound is the second member of this family of monohydrates to crystallize with higher formula units in the asymmetric unit (Z′ = 2). The CSD analysis clearly suggests that 4-hy­droxy-substituted DHPM mol­ecule are prone to crystallize in their hydrated form compared to 3-hy­droxy or 2-hy­droxy-substituted DHPM mol­ecules; this may be due to the observed O—H⋯O hydrogen bonding with water mol­ecule acceptors with the hydroxyl group in the preferred para position.

Synthesis and crystallization

The title compound was obtained by the reaction of three components, viz. methyl aceto­acetate, 4-hy­droxy­benzaldehyde and urea in ethanol solution according to a reported procedure (Tumtin et al., 2010 ▸). The reaction progress was monitored by thin layer chromatography and after the completion of the reaction, the solvent was removed and the solid obtained was recrystallized from ethanol to obtain the pure product. Colorless single crystals suitable for X-ray diffraction analysis were obtained by slow evaporation of a solution in ethanol (yield 75%, m.p. 412.3 K). FT–IR νmax cm−1: 3379 (O—H), 3248 (N—H), 2963 (sp 2 C—H), 2845 (sp 3 C—H), 1763 (C=O ester), 1682 (C=O amide), 1594 (C=C alkene), 1514 (C=C aromatic) and 1260 (C—O, ester).

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2 ▸. All hydrogen atoms were located in difference Fourier maps and freely refined.
Table 2

Experimental details

Crystal data
Chemical formulaC13H14N2O4·H2O
M r 280.28
Crystal system, space groupTriclinic, P
Temperature (K)150
a, b, c (Å)10.7527 (6), 11.6731 (6), 12.4456 (7)
α, β, γ (°)98.236 (2), 112.374 (1), 108.944 (2)
V3)1301.16 (13)
Z 4
Radiation typeMo Kα
μ (mm−1)0.11
Crystal size (mm)0.23 × 0.20 × 0.15
 
Data collection
DiffractometerBruker Kappa APEXII DUO
Absorption correctionMulti-scan (SADABS; Bruker, 2008)
T min, T max 0.926, 0.934
No. of measured, independent and observed [I > 2σ(I)] reflections21716, 5116, 4387
R int 0.044
(sin θ/λ)max−1)0.617
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.038, 0.099, 1.04
No. of reflections5116
No. of parameters489
H-atom treatmentAll H-atom parameters refined
Δρmax, Δρmin (e Å−3)0.23, −0.28

Computer programs: APEX2 and SAINT (Bruker, 2008 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014/7 (Sheldrick, 2015 ▸), Mercury (Farrugia, 2012 ▸) and ORTEP-3 for Windows (Macrae et al, 2008 ▸).

Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989016013359/hb7604sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989016013359/hb7604Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989016013359/hb7604Isup3.cml CCDC reference: 1499989 Additional supporting information: crystallographic information; 3D view; checkCIF report
C13H14N2O4·H2OZ = 4
Mr = 280.28F(000) = 592
Triclinic, P1Dx = 1.431 Mg m3
a = 10.7527 (6) ÅMo Kα radiation, λ = 0.71073 Å
b = 11.6731 (6) ÅCell parameters from 740 reflections
c = 12.4456 (7) Åθ = 2.2–30.1°
α = 98.236 (2)°µ = 0.11 mm1
β = 112.374 (1)°T = 150 K
γ = 108.944 (2)°Plate, colorless
V = 1301.16 (13) Å30.23 × 0.20 × 0.15 mm
Bruker Kappa APEXII DUO diffractometer5116 independent reflections
Radiation source: fine-focus sealed tube4387 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.044
ω scansθmax = 26.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −13→13
Tmin = 0.926, Tmax = 0.934k = −14→14
21716 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: difference Fourier map
wR(F2) = 0.099All H-atom parameters refined
S = 1.04w = 1/[σ2(Fo2) + (0.046P)2 + 0.5474P] where P = (Fo2 + 2Fc2)/3
5116 reflections(Δ/σ)max = 0.001
489 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
C10.39164 (15)0.54081 (12)0.87596 (12)0.0139 (3)
C20.60979 (15)0.53784 (13)0.86203 (12)0.0148 (3)
C30.53110 (14)0.42096 (12)0.77764 (12)0.0136 (3)
C40.36594 (14)0.34937 (12)0.73347 (12)0.0133 (3)
C50.60417 (15)0.35855 (12)0.72784 (13)0.0153 (3)
C60.56565 (17)0.17576 (14)0.58648 (15)0.0209 (3)
C70.77354 (16)0.61333 (15)0.91932 (15)0.0213 (3)
C80.26914 (14)0.32159 (12)0.59847 (12)0.0135 (3)
C90.16677 (15)0.19821 (12)0.52680 (13)0.0147 (3)
C100.07261 (15)0.17160 (12)0.40490 (13)0.0153 (3)
C110.07936 (15)0.26965 (13)0.35266 (12)0.0142 (3)
C120.18128 (15)0.39416 (13)0.42297 (13)0.0155 (3)
C130.27411 (15)0.41876 (13)0.54497 (13)0.0155 (3)
C140.62129 (15)0.92206 (13)1.09772 (12)0.0144 (3)
C150.40117 (15)0.90446 (13)1.12011 (12)0.0149 (3)
C160.46382 (15)1.02900 (13)1.18448 (12)0.0149 (3)
C170.62246 (15)1.11457 (12)1.21918 (12)0.0142 (3)
C180.37813 (15)1.08432 (13)1.22405 (13)0.0179 (3)
C190.37283 (19)1.26713 (15)1.32473 (17)0.0253 (3)
C200.24606 (16)0.81093 (14)1.07923 (14)0.0209 (3)
C210.72322 (14)1.15937 (12)1.35558 (12)0.0134 (3)
C220.81179 (15)1.28805 (12)1.41893 (13)0.0154 (3)
C230.90581 (15)1.32811 (12)1.54268 (13)0.0160 (3)
C240.91207 (14)1.23915 (13)1.60557 (12)0.0146 (3)
C250.82479 (15)1.10980 (13)1.54369 (13)0.0146 (3)
C260.73188 (14)1.07151 (12)1.41985 (13)0.0140 (3)
N10.53814 (13)0.59703 (11)0.90574 (11)0.0163 (3)
N20.31652 (13)0.42046 (11)0.80401 (11)0.0153 (3)
N30.48323 (13)0.85228 (11)1.08401 (11)0.0162 (3)
N40.68018 (13)1.04716 (11)1.15386 (11)0.0154 (3)
O10.33372 (11)0.59969 (9)0.91804 (9)0.0185 (2)
O20.73271 (11)0.40171 (9)0.74845 (10)0.0225 (2)
O30.50735 (11)0.24088 (9)0.64955 (9)0.0191 (2)
O4−0.01614 (11)0.23932 (9)0.23188 (9)0.0178 (2)
O5−0.03765 (13)0.44197 (10)0.16905 (11)0.0253 (3)
O60.68445 (10)0.86842 (9)1.05711 (9)0.0181 (2)
O70.25613 (12)1.02650 (11)1.21377 (13)0.0372 (3)
O80.45133 (11)1.21067 (9)1.27839 (10)0.0215 (2)
O91.00441 (11)1.28271 (9)1.72845 (9)0.0182 (2)
O101.02933 (13)1.10134 (11)1.82525 (11)0.0279 (3)
H20.3460 (16)0.2653 (14)0.7513 (13)0.012 (4)*
H40.6248 (16)1.1903 (14)1.1908 (14)0.013 (4)*
H6C0.801 (2)0.695 (2)0.9685 (19)0.042 (6)*
H6A0.6325 (19)0.1504 (15)0.6451 (15)0.020 (4)*
H6B0.618 (2)0.2300 (17)0.5497 (17)0.032 (5)*
H7A0.473 (2)0.1020 (18)0.5170 (18)0.037 (5)*
H7B0.810 (2)0.6203 (19)0.8581 (19)0.043 (6)*
H7C0.823 (2)0.572 (2)0.971 (2)0.050 (6)*
H90.1627 (17)0.1297 (15)0.5647 (14)0.014 (4)*
H100.0015 (18)0.0858 (15)0.3535 (15)0.017 (4)*
H120.1873 (18)0.4638 (16)0.3874 (15)0.023 (4)*
H130.3430 (18)0.5067 (16)0.5956 (15)0.022 (4)*
H19A0.272 (2)1.2425 (19)1.2587 (19)0.041 (5)*
H19B0.430 (2)1.355 (2)1.354 (2)0.050 (6)*
H19C0.369 (2)1.2410 (18)1.3956 (18)0.035 (5)*
H20A0.224 (2)0.8036 (18)1.1506 (19)0.040 (5)*
H20B0.176 (2)0.8369 (18)1.0264 (18)0.035 (5)*
H20C0.232 (2)0.725 (2)1.0365 (19)0.043 (6)*
H220.8056 (18)1.3477 (16)1.3726 (15)0.022 (4)*
H230.9677 (18)1.4181 (16)1.5872 (15)0.019 (4)*
H250.8305 (18)1.0473 (15)1.5905 (15)0.020 (4)*
H260.6728 (17)0.9814 (15)1.3765 (14)0.014 (4)*
H1N0.587 (2)0.6755 (18)0.9547 (16)0.025 (4)*
H3N0.442 (2)0.7732 (19)1.0363 (18)0.034 (5)*
H2N0.220 (2)0.3872 (16)0.7813 (16)0.024 (4)*
H4N0.769 (2)1.0913 (17)1.1660 (16)0.025 (5)*
H1O−0.017 (2)0.308 (2)0.2135 (19)0.045 (6)*
H2O1.007 (2)1.218 (2)1.759 (2)0.047 (6)*
H3O−0.126 (3)0.447 (2)0.147 (2)0.049 (6)*
H4O0.033 (2)0.513 (2)0.1929 (19)0.040 (6)*
H5O0.954 (3)1.045 (2)1.824 (2)0.050 (6)*
H6O1.115 (3)1.097 (2)1.870 (2)0.048 (6)*
U11U22U33U12U13U23
C10.0135 (7)0.0148 (6)0.0126 (6)0.0056 (5)0.0053 (5)0.0037 (5)
C20.0130 (7)0.0171 (7)0.0149 (7)0.0068 (5)0.0060 (5)0.0064 (5)
C30.0112 (6)0.0138 (6)0.0153 (7)0.0050 (5)0.0053 (5)0.0056 (5)
C40.0118 (6)0.0104 (6)0.0175 (7)0.0041 (5)0.0075 (5)0.0021 (5)
C50.0140 (7)0.0136 (6)0.0176 (7)0.0055 (5)0.0065 (6)0.0058 (5)
C60.0216 (8)0.0187 (7)0.0271 (8)0.0102 (6)0.0155 (7)0.0031 (6)
C70.0136 (7)0.0198 (7)0.0219 (8)0.0025 (6)0.0057 (6)−0.0002 (6)
C80.0104 (6)0.0133 (6)0.0171 (7)0.0055 (5)0.0071 (5)0.0021 (5)
C90.0139 (7)0.0123 (6)0.0196 (7)0.0061 (5)0.0091 (6)0.0039 (5)
C100.0120 (7)0.0112 (6)0.0192 (7)0.0035 (5)0.0067 (6)−0.0008 (5)
C110.0111 (6)0.0171 (7)0.0147 (7)0.0067 (5)0.0066 (5)0.0019 (5)
C120.0140 (7)0.0137 (6)0.0190 (7)0.0056 (5)0.0079 (6)0.0051 (5)
C130.0112 (6)0.0111 (6)0.0201 (7)0.0026 (5)0.0061 (6)0.0010 (5)
C140.0125 (6)0.0160 (6)0.0116 (6)0.0059 (5)0.0026 (5)0.0034 (5)
C150.0121 (7)0.0191 (7)0.0117 (6)0.0066 (5)0.0038 (5)0.0041 (5)
C160.0119 (7)0.0173 (7)0.0157 (7)0.0063 (5)0.0060 (5)0.0052 (5)
C170.0137 (7)0.0128 (6)0.0169 (7)0.0061 (5)0.0074 (6)0.0038 (5)
C180.0142 (7)0.0180 (7)0.0205 (7)0.0067 (6)0.0072 (6)0.0050 (6)
C190.0263 (9)0.0200 (8)0.0398 (10)0.0132 (7)0.0224 (8)0.0086 (7)
C200.0140 (7)0.0191 (7)0.0216 (8)0.0023 (6)0.0065 (6)−0.0007 (6)
C210.0100 (6)0.0131 (6)0.0173 (7)0.0048 (5)0.0074 (5)0.0015 (5)
C220.0150 (7)0.0126 (6)0.0207 (7)0.0057 (5)0.0104 (6)0.0041 (5)
C230.0134 (7)0.0098 (6)0.0214 (7)0.0021 (5)0.0089 (6)−0.0012 (5)
C240.0101 (6)0.0163 (6)0.0153 (7)0.0050 (5)0.0062 (5)−0.0008 (5)
C250.0120 (6)0.0142 (6)0.0187 (7)0.0058 (5)0.0079 (6)0.0041 (5)
C260.0110 (6)0.0095 (6)0.0190 (7)0.0028 (5)0.0068 (5)0.0008 (5)
N10.0130 (6)0.0115 (6)0.0173 (6)0.0017 (5)0.0051 (5)−0.0016 (5)
N20.0101 (6)0.0147 (6)0.0172 (6)0.0030 (5)0.0060 (5)0.0001 (5)
N30.0128 (6)0.0126 (6)0.0178 (6)0.0032 (5)0.0053 (5)−0.0005 (5)
N40.0119 (6)0.0142 (6)0.0175 (6)0.0034 (5)0.0071 (5)0.0013 (5)
O10.0154 (5)0.0168 (5)0.0201 (5)0.0061 (4)0.0074 (4)−0.0002 (4)
O20.0129 (5)0.0211 (5)0.0301 (6)0.0053 (4)0.0101 (4)0.0021 (4)
O30.0158 (5)0.0139 (5)0.0264 (6)0.0052 (4)0.0114 (4)0.0000 (4)
O40.0158 (5)0.0165 (5)0.0148 (5)0.0042 (4)0.0039 (4)0.0023 (4)
O50.0141 (6)0.0149 (5)0.0356 (6)0.0039 (5)0.0036 (5)0.0026 (5)
O60.0150 (5)0.0169 (5)0.0202 (5)0.0072 (4)0.0073 (4)0.0008 (4)
O70.0200 (6)0.0253 (6)0.0613 (9)0.0033 (5)0.0247 (6)−0.0035 (6)
O80.0200 (5)0.0154 (5)0.0342 (6)0.0086 (4)0.0173 (5)0.0051 (4)
O90.0152 (5)0.0160 (5)0.0152 (5)0.0027 (4)0.0041 (4)−0.0005 (4)
O100.0135 (6)0.0255 (6)0.0367 (7)0.0048 (5)0.0054 (5)0.0119 (5)
C1—O11.2481 (17)C15—C201.4984 (19)
C1—N21.3342 (17)C16—C181.4659 (19)
C1—N11.3653 (18)C16—C171.5177 (19)
C2—C31.3579 (19)C17—N41.4776 (17)
C2—N11.3872 (18)C17—C211.5188 (19)
C2—C71.4973 (19)C17—H40.994 (15)
C3—C51.4647 (19)C18—O71.2105 (18)
C3—C41.5218 (18)C18—O81.3444 (17)
C4—N21.4745 (17)C19—O81.4499 (17)
C4—C81.5182 (19)C19—H19A0.99 (2)
C4—H21.009 (15)C19—H19B0.94 (2)
C5—O21.2127 (17)C19—H19C0.98 (2)
C5—O31.3548 (17)C20—H20A1.01 (2)
C6—O31.4491 (17)C20—H20B0.96 (2)
C6—H6A0.968 (17)C20—H20C1.00 (2)
C6—H6B0.989 (19)C21—C261.3931 (19)
C6—H7A1.03 (2)C21—C221.3946 (19)
C7—H6C0.95 (2)C22—C231.384 (2)
C7—H7B0.98 (2)C22—H220.968 (17)
C7—H7C0.96 (2)C23—C241.391 (2)
C8—C91.3917 (19)C23—H230.975 (17)
C8—C131.3918 (19)C24—O91.3699 (17)
C9—C101.384 (2)C24—C251.3965 (19)
C9—H90.982 (16)C25—C261.383 (2)
C10—C111.3904 (19)C25—H250.999 (17)
C10—H100.972 (16)C26—H260.971 (16)
C11—O41.3696 (16)N1—H1N0.878 (19)
C11—C121.3966 (19)N2—H2N0.890 (19)
C12—C131.385 (2)N3—H3N0.88 (2)
C12—H120.976 (17)N4—H4N0.867 (19)
C13—H130.983 (17)O4—H1O0.86 (2)
C14—O61.2472 (17)O5—H3O0.91 (2)
C14—N41.3386 (18)O5—H4O0.83 (2)
C14—N31.3706 (18)O9—H2O0.90 (2)
C15—C161.3523 (19)O10—H5O0.86 (3)
C15—N31.3869 (18)O10—H6O0.90 (2)
O1—C1—N2122.43 (12)N4—C17—C16109.46 (11)
O1—C1—N1120.57 (12)N4—C17—C21109.83 (11)
N2—C1—N1116.97 (12)C16—C17—C21113.17 (11)
C3—C2—N1119.80 (12)N4—C17—H4106.2 (9)
C3—C2—C7126.65 (13)C16—C17—H4109.2 (9)
N1—C2—C7113.53 (12)C21—C17—H4108.7 (9)
C2—C3—C5120.57 (12)O7—C18—O8121.30 (13)
C2—C3—C4121.63 (12)O7—C18—C16126.02 (13)
C5—C3—C4117.78 (11)O8—C18—C16112.66 (12)
N2—C4—C8108.71 (10)O8—C19—H19A109.5 (12)
N2—C4—C3109.65 (11)O8—C19—H19B106.2 (14)
C8—C4—C3115.47 (11)H19A—C19—H19B112.9 (18)
N2—C4—H2105.7 (9)O8—C19—H19C110.4 (11)
C8—C4—H2107.5 (9)H19A—C19—H19C111.3 (16)
C3—C4—H2109.4 (9)H19B—C19—H19C106.4 (17)
O2—C5—O3121.53 (13)C15—C20—H20A111.6 (12)
O2—C5—C3127.41 (13)C15—C20—H20B111.1 (12)
O3—C5—C3111.05 (11)H20A—C20—H20B106.6 (16)
O3—C6—H6A107.7 (10)C15—C20—H20C109.4 (12)
O3—C6—H6B112.2 (11)H20A—C20—H20C107.8 (16)
H6A—C6—H6B110.0 (14)H20B—C20—H20C110.3 (16)
O3—C6—H7A103.6 (11)C26—C21—C22118.39 (13)
H6A—C6—H7A115.1 (14)C26—C21—C17120.28 (12)
H6B—C6—H7A108.1 (15)C22—C21—C17121.31 (12)
C2—C7—H6C110.7 (12)C23—C22—C21121.08 (13)
C2—C7—H7B112.1 (12)C23—C22—H22121.6 (10)
H6C—C7—H7B109.6 (17)C21—C22—H22117.3 (10)
C2—C7—H7C109.8 (13)C22—C23—C24119.74 (12)
H6C—C7—H7C107.8 (18)C22—C23—H23121.3 (9)
H7B—C7—H7C106.7 (17)C24—C23—H23119.0 (10)
C9—C8—C13118.41 (13)O9—C24—C23118.02 (12)
C9—C8—C4120.22 (12)O9—C24—C25121.92 (12)
C13—C8—C4121.27 (12)C23—C24—C25120.06 (13)
C10—C9—C8121.23 (13)C26—C25—C24119.37 (12)
C10—C9—H9120.3 (9)C26—C25—H25121.7 (10)
C8—C9—H9118.5 (9)C24—C25—H25118.9 (10)
C9—C10—C11119.66 (12)C25—C26—C21121.36 (12)
C9—C10—H10122.1 (9)C25—C26—H26119.4 (9)
C11—C10—H10118.2 (9)C21—C26—H26119.3 (9)
O4—C11—C10117.81 (12)C1—N1—C2123.79 (12)
O4—C11—C12122.17 (12)C1—N1—H1N115.9 (12)
C10—C11—C12120.02 (13)C2—N1—H1N120.3 (12)
C13—C12—C11119.37 (13)C1—N2—C4126.69 (12)
C13—C12—H12119.8 (10)C1—N2—H2N115.7 (11)
C11—C12—H12120.8 (10)C4—N2—H2N115.6 (11)
C12—C13—C8121.30 (12)C14—N3—C15123.93 (12)
C12—C13—H13119.6 (10)C14—N3—H3N114.0 (13)
C8—C13—H13119.1 (10)C15—N3—H3N120.9 (13)
O6—C14—N4123.48 (13)C14—N4—C17126.51 (12)
O6—C14—N3119.81 (12)C14—N4—H4N117.2 (12)
N4—C14—N3116.70 (12)C17—N4—H4N115.1 (12)
C16—C15—N3119.54 (12)C5—O3—C6115.32 (11)
C16—C15—C20127.09 (13)C11—O4—H1O109.9 (14)
N3—C15—C20113.36 (12)H3O—O5—H4O112.6 (19)
C15—C16—C18119.77 (12)C18—O8—C19113.98 (11)
C15—C16—C17122.02 (12)C24—O9—H2O111.0 (15)
C18—C16—C17118.21 (12)H5O—O10—H6O113 (2)
N1—C2—C3—C5178.24 (12)C15—C16—C18—O8−175.05 (12)
C7—C2—C3—C5−3.6 (2)C17—C16—C18—O85.71 (18)
N1—C2—C3—C4−2.98 (19)N4—C17—C21—C26−68.68 (15)
C7—C2—C3—C4175.15 (13)C16—C17—C21—C2653.97 (16)
C2—C3—C4—N2−5.41 (17)N4—C17—C21—C22109.60 (14)
C5—C3—C4—N2173.40 (11)C16—C17—C21—C22−127.75 (13)
C2—C3—C4—C8117.77 (14)C26—C21—C22—C23−0.2 (2)
C5—C3—C4—C8−63.42 (15)C17—C21—C22—C23−178.55 (12)
C2—C3—C5—O2−3.9 (2)C21—C22—C23—C24−0.3 (2)
C4—C3—C5—O2177.25 (13)C22—C23—C24—O9−178.78 (12)
C2—C3—C5—O3177.24 (12)C22—C23—C24—C250.6 (2)
C4—C3—C5—O3−1.58 (17)O9—C24—C25—C26179.01 (12)
N2—C4—C8—C9−108.73 (13)C23—C24—C25—C26−0.4 (2)
C3—C4—C8—C9127.59 (13)C24—C25—C26—C21−0.2 (2)
N2—C4—C8—C1367.52 (16)C22—C21—C26—C250.5 (2)
C3—C4—C8—C13−56.15 (17)C17—C21—C26—C25178.83 (12)
C13—C8—C9—C100.6 (2)O1—C1—N1—C2−179.62 (12)
C4—C8—C9—C10176.94 (12)N2—C1—N1—C22.45 (19)
C8—C9—C10—C11−0.3 (2)C3—C2—N1—C15.2 (2)
C9—C10—C11—O4−179.75 (12)C7—C2—N1—C1−173.19 (13)
C9—C10—C11—C120.3 (2)O1—C1—N2—C4169.09 (12)
O4—C11—C12—C13179.50 (12)N1—C1—N2—C4−13.0 (2)
C10—C11—C12—C13−0.6 (2)C8—C4—N2—C1−113.04 (14)
C11—C12—C13—C80.8 (2)C3—C4—N2—C114.04 (18)
C9—C8—C13—C12−0.8 (2)O6—C14—N3—C15−176.36 (12)
C4—C8—C13—C12−177.17 (12)N4—C14—N3—C152.68 (19)
N3—C15—C16—C18−179.33 (12)C16—C15—N3—C14−7.4 (2)
C20—C15—C16—C181.5 (2)C20—C15—N3—C14171.83 (12)
N3—C15—C16—C17−0.1 (2)O6—C14—N4—C17−170.82 (12)
C20—C15—C16—C17−179.25 (13)N3—C14—N4—C1710.18 (19)
C15—C16—C17—N410.20 (18)C16—C17—N4—C14−15.85 (18)
C18—C16—C17—N4−170.57 (11)C21—C17—N4—C14108.97 (14)
C15—C16—C17—C21−112.65 (14)O2—C5—O3—C6−4.45 (19)
C18—C16—C17—C2166.57 (15)C3—C5—O3—C6174.46 (11)
C15—C16—C18—O76.7 (2)O7—C18—O8—C191.7 (2)
C17—C16—C18—O7−172.58 (15)C16—C18—O8—C19−176.70 (12)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O60.878 (19)2.10 (2)2.9762 (16)173.1 (17)
N3—H3N···O10.88 (2)1.98 (2)2.8626 (16)174 (2)
N2—H2N···O9i0.89 (2)2.02 (2)2.8971 (19)170.0 (18)
N4—H4N···O4ii0.87 (2)2.13 (2)2.9738 (19)163.4 (18)
O4—H1O···O50.87 (2)1.78 (2)2.6473 (16)175 (2)
O9—H2O···O100.90 (2)1.73 (2)2.6189 (17)174.7 (19)
O5—H4O···O2iii0.84 (2)2.15 (2)2.8549 (19)141 (2)
O5—H3O···O1iv0.91 (3)1.91 (3)2.786 (2)162 (2)
C20—H20C···O5iv1.00 (2)2.56 (2)3.332 (2)133.7 (17)
C26—H26···O3v0.971 (17)2.571 (18)3.4607 (18)152.4 (14)
C6—H6B···Cg2vi0.989 (19)2.70 (2)3.392 (2)127.1 (16)
C19—H19C···Cg1vii0.98 (2)2.84 (2)3.395 (2)116.5 (16)
  8 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and antitubercular activity of 2-(substituted phenyl/benzyl-amino)-6-(4-chlorophenyl)-5-(methoxycarbonyl)-4-methyl-3,6-dihydropyrimidin-1-ium chlorides.

Authors:  Venugopala K Narayanaswamy; Susanta K Nayak; Melendhran Pillay; Renuka Prasanna; Yacoob M Coovadia; Bharti Odhav
Journal:  Chem Biol Drug Des       Date:  2012-11-14       Impact factor: 2.817

Review 3.  Biologically active dihydropyrimidones of the Biginelli-type--a literature survey.

Authors:  C O Kappe
Journal:  Eur J Med Chem       Date:  2000-12       Impact factor: 6.514

4.  Ethyl 4-(4-hydroxy-phen-yl)-6-methyl-2-oxo-1,2,3,4-tetra-hydro-pyrimidine-5-carboxyl-ate monohydrate.

Authors:  Susanta K Nayak; K N Venugopala; Deepak Chopra; Thavendran Govender; Hendrik G Kruger; Glenn E M Maguire; T N Guru Row
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-19

5.  Ethyl 4-(4-hydroxy-phen-yl)-6-methyl-2-oxo-1,2,3,4-tetra-hydro-pyrimidine-5-carboxyl-ate monohydrate.

Authors:  Ushati Das; Shardul B Chheda; Suhas R Pednekar; Narendra P Karambelkar; T N Guru Row
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-29

6.  Methyl 4-(3-eth-oxy-4-hydroxy-phen-yl)-6-methyl-2-oxo-1,2,3,4-tetra-hydro-pyrimidine-5-carboxyl-ate monohydrate.

Authors:  M Thenmozhi; T Kavitha; V S V Satyanarayana; V Vijayakumar; M N Ponnuswamy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-18

7.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

8.  The Cambridge Structural Database.

Authors:  Colin R Groom; Ian J Bruno; Matthew P Lightfoot; Suzanna C Ward
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2016-04-01
  8 in total

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