| Literature DB >> 27920917 |
Anaïs Kobsch1, Robert T Downs2, Kenneth J Domanik3.
Abstract
The crystal structure of metarossite, ideally CaV2O6·2H2O [chemical name: calcium divanadium(V) hexa-oxide dihydrate], was first determined using precession photographs, with fixed isotropic displacement parameters and without locating the positions of the H atoms, leading to a reliability factor R = 0.11 [Kelsey & Barnes (1960 ▸). Can. Mineral.6, 448-466]. This communication reports a structure redetermination of this mineral on the basis of single-crystal X-ray diffraction data of a natural sample from the Blue Cap mine, San Juan County, Utah, USA (R1 = 0.036). Our study not only confirms the structural topology reported in the previous study, but also makes possible the refinement of all non-H atoms with anisotropic displacement parameters and all H atoms located. The metarossite structure is characterized by chains of edge-sharing [CaO8] polyhedra parallel to [100] that are themselves connected by chains of alternating [VO5] trigonal bipyramids parallel to [010]. The two H2O mol-ecules are bonded to Ca. Analysis of the displacement parameters show that the [VO5] chains librate around [010]. In addition, we measured the Raman spectrum of metarossite and compared it with IR and Raman data previously reported. Moreover, heating of metarossite led to a loss of water, which results in a transformation to the brannerite-type structure, CaV2O6, implying a possible dehydration pathway for the compounds M2+V2O6·xH2O, with M = Cu, Cd, Mg or Mn, and x = 2 or 4.Entities:
Keywords: brannerite; crystal structure; hydrogen bonds; metarossite; phase transformation; redetermination
Year: 2016 PMID: 27920917 PMCID: PMC5120707 DOI: 10.1107/S2056989016012433
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1Photograph of the metarossite specimen analyzed in this study.
Figure 2Crystal structure of metarossite, showing (a) the chains of alternating [V1O5] and [V2O5] trigonal bipyramids (yellow and green, respectively) along [010], and (b) the chains of edge-sharing distorted [CaO8] square antiprisms (magenta) along [100]. H atoms are represented by blue spheres; hydrogen bonding is indicated by dashed lines.
Figure 3A view down [010] of the [VO5] chain composed of alternated [V1O5] (yellow) and [V2O5] (green) polyhedra. The red ellipsoids represent the displacement parameters of the O atoms at the 99.999% probability level. The black circles demonstrate that the entire [VO5] chain oscillate or librate around [010], with a slight radial increase of amplitudes.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O | 0.78 (5) | 2.37 (5) | 2.965 (4) | 133 (4) |
| O | 0.72 (4) | 2.25 (5) | 2.900 (3) | 150 (5) |
| O | 0.75 (4) | 2.09 (5) | 2.810 (3) | 162 (5) |
| O | 0.84 (4) | 1.97 (5) | 2.794 (3) | 166 (4) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .
Bond-valence sums for metarossite
| O1 | O2 | O | O4 | O5 | O6 | O7 | O |
| |
|---|---|---|---|---|---|---|---|---|---|
| Ca | 0.253 | 0.218 | 0.315 | 0.272 | 0.240 | 0.205 |
| ||
| 0.326 | 0.278 | ||||||||
| V1 | 0.581 | 0.687 | 1.491 | 1.624 |
| ||||
| 0.770 | |||||||||
| V2 | 0.825 | 0.780 | 1.584 | 1.415 |
| ||||
| 0.479 | |||||||||
|
|
|
|
|
|
|
|
|
|
Note: (*) H atoms not considered for calculation.
Figure 4Raman spectrum of metarossite collected with a 532 nm laser. Only the band at 3400 cm−1 can be clearly assigned to hydrogen stretching vibrations (OW8–H4) but the broad shoulder discernible around 3415–3480 cm−1 corresponds probably to OW8–H3 and OW3–H2 vibrations.
O⋯O measured distances (Å), Raman stretching frequencies (cm−1) calculated using the correlation for d < 3.2 Å and samples without Cu (Libowitzky, 1999 ▸), and comparison with O⋯O calculated by Frost et al. (2004 ▸) from IR frequencies (cm−1).
| This study | Frost | |||
|---|---|---|---|---|
| O—H⋯O | O⋯O | ν | ν | O⋯O |
| O | 2.965 | 3504 | 3526 | 2.9393 |
| O | 2.900 | 3482 | 3387 | 2.7995 |
| O | 2.810 | 3421 | 3181 | 2.6977 |
| O | 2.794 | 3404 | 2867 | 2.6227 |
Figure 5Raman spectrum of metarossite after heated by a full power 532 nm laser (red curve) and comparison with an initial metarossite spectrum (black curve).
Experimental details
| Crystal data | |
| Chemical formula | CaV2O6·2H2O |
|
| 273.99 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 293 |
|
| 6.2059 (4), 7.0635 (4), 7.7516 (5) |
| α, β, γ (°) | 93.166 (4), 96.548 (4), 105.883 (4) |
|
| 323.36 (4) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 3.68 |
| Crystal size (mm) | 0.07 × 0.07 × 0.06 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD area-detector |
| Absorption correction | Multi-scan ( |
|
| 0.669, 0.746 |
| No. of measured, independent and observed [ | 5576, 2075, 1508 |
|
| 0.037 |
| (sin θ/λ)max (Å−1) | 0.735 |
| Refinement | |
|
| 0.036, 0.076, 1.01 |
| No. of reflections | 2075 |
| No. of parameters | 113 |
| H-atom treatment | Only H-atom coordinates refined |
| Δρmax, Δρmin (e Å−3) | 0.77, −0.58 |
Computer programs: APEX2 and SAINT (Bruker, 2004 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL2014 (Sheldrick, 2015b ▸), XtalDraw (Downs & Hall-Wallace, 2003 ▸) and publCIF (Westrip, 2010 ▸).
| CaV2O6·2H2O | |
| Triclinic, | |
| Mo | |
| Cell parameters from 1255 reflections | |
| θ = 2.7–29.8° | |
| α = 93.166 (4)° | µ = 3.68 mm−1 |
| β = 96.548 (4)° | |
| γ = 105.883 (4)° | Platy, pale yellow |
| 0.07 × 0.07 × 0.06 mm |
| Bruker APEXII CCD area-detector diffractometer | 1508 reflections with |
| φ and ω scan | |
| Absorption correction: multi-scan ( | θmax = 31.5°, θmin = 2.7° |
| 5576 measured reflections | |
| 2075 independent reflections |
| Refinement on | Hydrogen site location: difference Fourier map |
| Least-squares matrix: full | Only H-atom coordinates refined |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.77 e Å−3 | |
| 2075 reflections | Δρmin = −0.58 e Å−3 |
| 113 parameters | Extinction correction: SHELXL2014 (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 0 restraints | Extinction coefficient: 0.005 (2) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Ca | 0.76199 (10) | 0.46286 (9) | 0.14933 (8) | 0.01285 (14) | |
| V1 | 0.44824 (9) | 0.10219 (7) | 0.33438 (6) | 0.01068 (13) | |
| V2 | 0.37329 (8) | 0.58264 (7) | 0.34629 (6) | 0.01004 (13) | |
| O1 | 0.4051 (4) | 0.8480 (3) | 0.4170 (3) | 0.0137 (4) | |
| O2 | 0.5250 (3) | 0.3869 (3) | 0.3867 (3) | 0.0106 (4) | |
| OW3 | 0.8519 (5) | 0.7632 (4) | 0.3671 (4) | 0.0236 (6) | |
| O4 | 0.1030 (3) | 0.4726 (3) | 0.3330 (3) | 0.0157 (5) | |
| O5 | 0.1896 (4) | 0.0684 (3) | 0.2322 (3) | 0.0207 (5) | |
| O6 | 0.6214 (4) | 0.1115 (3) | 0.1910 (3) | 0.0232 (5) | |
| O7 | 0.4308 (4) | 0.5998 (3) | 0.1408 (3) | 0.0155 (5) | |
| OW8 | 0.0045 (4) | 0.7225 (3) | 0.0059 (3) | 0.0164 (5) | |
| H1 | 0.937 (8) | 0.747 (6) | 0.444 (6) | 0.040* | |
| H2 | 0.900 (8) | 0.856 (7) | 0.332 (6) | 0.040* | |
| H3 | 0.078 (8) | 0.808 (7) | 0.066 (6) | 0.040* | |
| H4 | −0.069 (7) | 0.766 (6) | −0.073 (6) | 0.040* |
| Ca | 0.0120 (3) | 0.0142 (3) | 0.0116 (3) | 0.0024 (2) | 0.0017 (2) | 0.0017 (2) |
| V1 | 0.0140 (3) | 0.0077 (2) | 0.0094 (2) | 0.00209 (19) | 0.00032 (18) | 0.00023 (18) |
| V2 | 0.0124 (2) | 0.0082 (2) | 0.0087 (2) | 0.0026 (2) | −0.00078 (18) | −0.00002 (18) |
| O1 | 0.0216 (11) | 0.0084 (10) | 0.0098 (10) | 0.0030 (9) | −0.0002 (8) | 0.0005 (8) |
| O2 | 0.0116 (10) | 0.0092 (10) | 0.0109 (10) | 0.0032 (8) | −0.0001 (8) | 0.0002 (8) |
| OW3 | 0.0237 (13) | 0.0201 (13) | 0.0243 (14) | 0.0026 (11) | 0.0011 (10) | 0.0030 (11) |
| O4 | 0.0131 (10) | 0.0160 (11) | 0.0162 (11) | 0.0021 (9) | −0.0006 (8) | 0.0013 (9) |
| O5 | 0.0211 (12) | 0.0136 (11) | 0.0232 (13) | 0.0024 (9) | −0.0075 (9) | 0.0003 (9) |
| O6 | 0.0347 (14) | 0.0147 (11) | 0.0204 (12) | 0.0027 (11) | 0.0151 (10) | 0.0004 (9) |
| O7 | 0.0188 (11) | 0.0170 (11) | 0.0113 (10) | 0.0064 (9) | 0.0007 (8) | 0.0020 (9) |
| OW8 | 0.0196 (13) | 0.0132 (12) | 0.0130 (11) | 0.0005 (10) | −0.0014 (9) | 0.0006 (9) |
| Ca—O7i | 2.381 (2) | V1—O1iii | 1.899 (2) |
| Ca—O4ii | 2.394 (2) | V1—O2 | 1.943 (2) |
| Ca—OW8ii | 2.441 (2) | V1—O1iv | 2.004 (2) |
| Ca—O6 | 2.448 (2) | V1—V1v | 3.1033 (10) |
| Ca—O2 | 2.476 (2) | V1—V2iv | 3.1187 (7) |
| Ca—O7 | 2.496 (2) | V2—O4 | 1.633 (2) |
| Ca—OW3 | 2.530 (3) | V2—O7 | 1.675 (2) |
| Ca—OW8i | 2.554 (2) | V2—O1 | 1.874 (2) |
| V1—O6 | 1.623 (2) | V2—O2 | 1.895 (2) |
| V1—O5 | 1.655 (2) | V2—O2iv | 2.075 (2) |
| O7i—Ca—O4ii | 145.60 (8) | O6—Ca—OW8i | 71.80 (7) |
| O7i—Ca—OW8ii | 79.03 (8) | O2—Ca—OW8i | 133.65 (7) |
| O4ii—Ca—OW8ii | 84.88 (8) | O7—Ca—OW8i | 149.58 (7) |
| O7i—Ca—O6 | 89.84 (8) | OW3—Ca—OW8i | 135.12 (8) |
| O4ii—Ca—O6 | 88.49 (8) | O6—V1—O5 | 109.11 (13) |
| OW8ii—Ca—O6 | 148.85 (8) | O6—V1—O1iii | 105.21 (11) |
| O7i—Ca—O2 | 116.63 (7) | O5—V1—O1iii | 97.89 (11) |
| O4ii—Ca—O2 | 93.49 (7) | O6—V1—O2 | 94.99 (10) |
| OW8ii—Ca—O2 | 145.90 (8) | O5—V1—O2 | 97.89 (10) |
| O6—Ca—O2 | 64.79 (7) | O1iii—V1—O2 | 148.57 (9) |
| O7i—Ca—O7 | 72.07 (8) | O6—V1—O1iv | 114.83 (11) |
| O4ii—Ca—O7 | 140.72 (7) | O5—V1—O1iv | 135.88 (11) |
| OW8ii—Ca—O7 | 97.51 (8) | O1iii—V1—O1iv | 74.72 (9) |
| O6—Ca—O7 | 106.65 (8) | O2—V1—O1iv | 75.01 (8) |
| O2—Ca—O7 | 63.17 (7) | O4—V2—O7 | 106.24 (11) |
| O7i—Ca—OW3 | 131.12 (9) | O4—V2—O1 | 105.17 (10) |
| O4ii—Ca—OW3 | 72.51 (9) | O7—V2—O1 | 100.84 (10) |
| OW8ii—Ca—OW3 | 76.53 (8) | O4—V2—O2 | 106.81 (10) |
| O6—Ca—OW3 | 129.97 (8) | O7—V2—O2 | 93.48 (10) |
| O2—Ca—OW3 | 70.58 (8) | O1—V2—O2 | 139.47 (9) |
| O7—Ca—OW3 | 70.05 (8) | O4—V2—O2iv | 102.14 (10) |
| O7i—Ca—OW8i | 77.53 (7) | O7—V2—O2iv | 151.38 (10) |
| O4ii—Ca—OW8i | 69.34 (7) | O1—V2—O2iv | 74.79 (8) |
| OW8ii—Ca—OW8i | 77.39 (8) | O2—V2—O2iv | 74.69 (9) |
| H··· | ||||
| O | 0.78 (5) | 2.37 (5) | 2.965 (4) | 133 (4) |
| O | 0.72 (4) | 2.25 (5) | 2.900 (3) | 150 (5) |
| O | 0.75 (4) | 2.09 (5) | 2.810 (3) | 162 (5) |
| O | 0.84 (4) | 1.97 (5) | 2.794 (3) | 166 (4) |