| Literature DB >> 27920907 |
Hai Le Thi Hong1, Vinh Nguyen Thi Ngoc1, Anh Do Thi Van1, Luc Van Meervelt2.
Abstract
The asymmetric unit of the title compound, [Ni(H2O)6](C12H12BrN2O5S)2·Entities:
Keywords: crystal structure; hydrogen bonding; quinoline; π–π stacking
Year: 2016 PMID: 27920907 PMCID: PMC5120697 DOI: 10.1107/S2056989016012408
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The structures of the molecular components in the title compound with ellipsoids drawn at the 50% probability level. [Symmetry code: (i) −x + , −y + , −z + 1.]
Figure 2Packing diagram of the title compound viewed along the a axis. Dashed lines represent hydrogen bonds.
Figure 3Partial packing diagram of the title compound, showing π–π interactions between quinoline ring systems [grey dotted lines; Cg1 and Cg2 are the centroids of rings N1/C2–C6 and C5–C10, respectively; symmetry codes: (i) −x + 2, y, −z + ; (ii) −x + 2, −y + 1, −z + 1], and C—H⋯Br and C—H⋯O hydrogen bonds (red dotted lines).
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O21—H21⋯O17i | 0.83 (3) | 1.89 (3) | 2.707 (2) | 170 (3) |
| C11—H11 | 0.98 | 3.02 | 3.987 (2) | 171 |
| C19—H19 | 0.99 | 2.59 | 3.360 (3) | 134 |
| N18—H18⋯O25iii | 0.88 | 2.58 | 3.422 (2) | 159 |
| O23—H23 | 0.92 | 2.09 | 2.971 (2) | 161 |
| O23—H23 | 0.91 | 1.72 | 2.630 (2) | 172 |
| O24—H24 | 0.90 | 1.90 | 2.772 (2) | 162 |
| O24—H24 | 0.90 | 1.83 | 2.714 (2) | 165 |
| O25—H25 | 0.92 | 2.16 | 2.826 (2) | 129 |
| O25—H25 | 0.91 | 1.86 | 2.755 (2) | 165 |
| O26—H26⋯O14ii | 0.76 (3) | 2.03 (3) | 2.783 (2) | 175 (3) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .
Figure 4Partial packing diagram of the title compound viewed along the a axis, showing the X—H⋯O hydrogen bonds (red dotted lines, see Table 1 ▸ for details) and C—H⋯Br interactions (brown dotted lines).
Experimental details
| Crystal data | |
| Chemical formula | [Ni(H2O)6](C12H12BrN2O5S)2·H2O |
|
| 937.23 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 8.7315 (4), 27.4581 (13), 13.7943 (6) |
| β (°) | 94.061 (4) |
|
| 3298.9 (3) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 3.22 |
| Crystal size (mm) | 0.4 × 0.2 × 0.1 |
| Data collection | |
| Diffractometer | Agilent SuperNova (single source at offset, Eos detector) |
| Absorption correction | Multi-scan ( |
|
| 0.546, 0.725 |
| No. of measured, independent and observed [ | 9171, 3372, 3041 |
|
| 0.020 |
| (sin θ/λ)max (Å−1) | 0.625 |
| Refinement | |
|
| 0.024, 0.056, 1.08 |
| No. of reflections | 3372 |
| No. of parameters | 235 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.41, −0.49 |
Computer programs: CrysAlis PRO (Rigaku Oxford Diffraction, 2015 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸) and OLEX2 (Dolomanov et al., 2009 ▸).
| [Ni(H2O)6](C12H12BrN2O5S)2·H2O | |
| Monoclinic, | Mo |
| Cell parameters from 5359 reflections | |
| θ = 2.8–29.0° | |
| µ = 3.22 mm−1 | |
| β = 94.061 (4)° | |
| Plate, orange | |
| 0.4 × 0.2 × 0.1 mm |
| Agilent SuperNova (single source at offset, Eos detector) diffractometer | 3372 independent reflections |
| Radiation source: micro-focus sealed X-ray tube, SuperNova (Mo) X-ray Source | 3041 reflections with |
| Mirror monochromator | |
| Detector resolution: 15.9631 pixels mm-1 | θmax = 26.4°, θmin = 2.5° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 9171 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.002 | |
| 3372 reflections | Δρmax = 0.41 e Å−3 |
| 235 parameters | Δρmin = −0.49 e Å−3 |
| 0 restraints |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| N1 | 0.90237 (18) | 0.43668 (6) | 0.37155 (11) | 0.0110 (3) | |
| C2 | 0.9801 (2) | 0.39411 (8) | 0.37514 (14) | 0.0132 (4) | |
| H2 | 0.9254 | 0.3642 | 0.3739 | 0.016* | |
| C3 | 1.1379 (2) | 0.39384 (8) | 0.38056 (14) | 0.0131 (4) | |
| C4 | 1.2182 (2) | 0.43770 (8) | 0.38321 (13) | 0.0134 (4) | |
| H4 | 1.3273 | 0.4374 | 0.3877 | 0.016* | |
| C5 | 1.1403 (2) | 0.48189 (8) | 0.37930 (13) | 0.0108 (4) | |
| C6 | 0.9750 (2) | 0.48132 (8) | 0.37471 (13) | 0.0104 (4) | |
| C7 | 1.2125 (2) | 0.52820 (8) | 0.38177 (14) | 0.0119 (4) | |
| C8 | 1.1373 (2) | 0.57248 (8) | 0.38109 (13) | 0.0122 (4) | |
| C9 | 0.9683 (2) | 0.56934 (8) | 0.37556 (13) | 0.0110 (4) | |
| C10 | 0.8918 (2) | 0.52466 (8) | 0.37301 (13) | 0.0113 (4) | |
| H10 | 0.7828 | 0.5238 | 0.3701 | 0.014* | |
| C11 | 0.7332 (2) | 0.43449 (8) | 0.36504 (14) | 0.0128 (4) | |
| H11A | 0.6923 | 0.4543 | 0.3101 | 0.019* | |
| H11B | 0.6950 | 0.4470 | 0.4253 | 0.019* | |
| H11C | 0.6999 | 0.4006 | 0.3553 | 0.019* | |
| S12 | 1.23734 (6) | 0.33760 (2) | 0.37750 (4) | 0.01589 (12) | |
| O13 | 1.3871 (2) | 0.34725 (7) | 0.42443 (13) | 0.0360 (5) | |
| O14 | 1.24175 (17) | 0.32666 (6) | 0.27422 (10) | 0.0200 (3) | |
| O15 | 1.1481 (2) | 0.30278 (6) | 0.42858 (12) | 0.0323 (4) | |
| Br16 | 1.42949 (2) | 0.53172 (2) | 0.38060 (2) | 0.01722 (7) | |
| O17 | 1.19947 (16) | 0.61482 (5) | 0.38363 (10) | 0.0154 (3) | |
| N18 | 0.89569 (19) | 0.61215 (7) | 0.37205 (12) | 0.0136 (4) | |
| H18 | 0.9506 | 0.6391 | 0.3730 | 0.016* | |
| C19 | 0.7298 (2) | 0.61683 (8) | 0.35993 (15) | 0.0139 (4) | |
| H19A | 0.6846 | 0.6070 | 0.4208 | 0.017* | |
| H19B | 0.6892 | 0.5947 | 0.3075 | 0.017* | |
| C20 | 0.6831 (2) | 0.66848 (8) | 0.33499 (15) | 0.0162 (4) | |
| H20A | 0.5699 | 0.6704 | 0.3248 | 0.019* | |
| H20B | 0.7159 | 0.6902 | 0.3899 | 0.019* | |
| O21 | 0.75070 (19) | 0.68455 (6) | 0.24924 (11) | 0.0229 (4) | |
| H21 | 0.760 (3) | 0.6610 (11) | 0.213 (2) | 0.034* | |
| Ni22 | 0.2500 | 0.7500 | 0.5000 | 0.01747 (10) | |
| O23 | 0.35588 (18) | 0.75193 (6) | 0.37316 (12) | 0.0273 (4) | |
| H23A | 0.3304 | 0.7799 | 0.3392 | 0.041* | |
| H23B | 0.3270 | 0.7270 | 0.3322 | 0.041* | |
| O24 | 0.31091 (17) | 0.67782 (6) | 0.52289 (12) | 0.0237 (4) | |
| H24A | 0.4136 | 0.6748 | 0.5315 | 0.036* | |
| H24B | 0.2816 | 0.6604 | 0.4695 | 0.036* | |
| O25 | 0.44976 (16) | 0.77588 (5) | 0.57273 (12) | 0.0196 (3) | |
| H25A | 0.5337 | 0.7662 | 0.5414 | 0.029* | |
| H25B | 0.4680 | 0.7661 | 0.6357 | 0.029* | |
| O26 | 0.5000 | 0.73024 (9) | 0.7500 | 0.0218 (5) | |
| H26 | 0.570 (3) | 0.7142 (10) | 0.746 (2) | 0.033* |
| N1 | 0.0109 (8) | 0.0116 (9) | 0.0102 (8) | 0.0017 (7) | 0.0001 (6) | −0.0009 (7) |
| C2 | 0.0169 (10) | 0.0120 (10) | 0.0106 (9) | 0.0023 (8) | −0.0005 (8) | 0.0001 (8) |
| C3 | 0.0151 (10) | 0.0137 (11) | 0.0102 (9) | 0.0061 (8) | 0.0001 (7) | −0.0021 (8) |
| C4 | 0.0125 (10) | 0.0178 (11) | 0.0098 (9) | 0.0049 (8) | 0.0007 (7) | −0.0004 (8) |
| C5 | 0.0103 (9) | 0.0153 (11) | 0.0070 (8) | 0.0009 (8) | 0.0010 (7) | −0.0001 (8) |
| C6 | 0.0118 (9) | 0.0132 (11) | 0.0064 (8) | −0.0002 (8) | 0.0014 (7) | −0.0001 (8) |
| C7 | 0.0075 (9) | 0.0184 (11) | 0.0099 (9) | 0.0003 (8) | 0.0009 (7) | 0.0005 (8) |
| C8 | 0.0109 (10) | 0.0178 (11) | 0.0078 (9) | −0.0010 (8) | 0.0003 (7) | 0.0001 (8) |
| C9 | 0.0111 (10) | 0.0142 (11) | 0.0077 (9) | 0.0018 (8) | 0.0003 (7) | −0.0011 (8) |
| C10 | 0.0079 (9) | 0.0150 (11) | 0.0111 (9) | 0.0017 (8) | 0.0007 (7) | 0.0001 (8) |
| C11 | 0.0079 (9) | 0.0140 (11) | 0.0166 (10) | 0.0003 (8) | 0.0005 (7) | 0.0003 (8) |
| S12 | 0.0176 (3) | 0.0156 (3) | 0.0141 (2) | 0.0096 (2) | −0.00095 (19) | −0.0023 (2) |
| O13 | 0.0268 (9) | 0.0349 (11) | 0.0431 (11) | 0.0212 (8) | −0.0198 (8) | −0.0210 (9) |
| O14 | 0.0243 (8) | 0.0199 (9) | 0.0156 (7) | 0.0105 (7) | 0.0008 (6) | −0.0038 (6) |
| O15 | 0.0481 (11) | 0.0194 (9) | 0.0315 (9) | 0.0170 (8) | 0.0186 (8) | 0.0112 (8) |
| Br16 | 0.00740 (10) | 0.02418 (13) | 0.02029 (11) | 0.00080 (8) | 0.00253 (7) | 0.00294 (9) |
| O17 | 0.0144 (7) | 0.0140 (8) | 0.0177 (7) | −0.0023 (6) | −0.0002 (6) | 0.0003 (6) |
| N18 | 0.0113 (8) | 0.0107 (9) | 0.0189 (9) | −0.0004 (7) | 0.0006 (7) | 0.0002 (7) |
| C19 | 0.0094 (10) | 0.0138 (11) | 0.0184 (10) | 0.0013 (8) | 0.0001 (8) | 0.0003 (9) |
| C20 | 0.0162 (10) | 0.0160 (11) | 0.0163 (10) | 0.0034 (9) | −0.0004 (8) | −0.0003 (9) |
| O21 | 0.0355 (9) | 0.0159 (9) | 0.0179 (8) | 0.0045 (7) | 0.0053 (7) | 0.0017 (7) |
| Ni22 | 0.00750 (18) | 0.0097 (2) | 0.0349 (2) | −0.00015 (14) | −0.00080 (16) | −0.00713 (17) |
| O23 | 0.0182 (8) | 0.0217 (9) | 0.0422 (10) | −0.0036 (7) | 0.0036 (7) | −0.0123 (8) |
| O24 | 0.0136 (7) | 0.0140 (8) | 0.0422 (10) | 0.0032 (6) | −0.0073 (7) | −0.0106 (7) |
| O25 | 0.0107 (7) | 0.0148 (8) | 0.0331 (9) | −0.0003 (6) | 0.0004 (6) | −0.0042 (7) |
| O26 | 0.0133 (11) | 0.0133 (12) | 0.0403 (14) | 0.000 | 0.0117 (10) | 0.000 |
| N1—C2 | 1.351 (3) | S12—O15 | 1.4474 (18) |
| N1—C6 | 1.380 (3) | N18—H18 | 0.8806 |
| N1—C11 | 1.475 (2) | N18—C19 | 1.452 (2) |
| C2—H2 | 0.9500 | C19—H19A | 0.9900 |
| C2—C3 | 1.374 (3) | C19—H19B | 0.9900 |
| C3—C4 | 1.393 (3) | C19—C20 | 1.509 (3) |
| C3—S12 | 1.774 (2) | C20—H20A | 0.9900 |
| C4—H4 | 0.9500 | C20—H20B | 0.9900 |
| C4—C5 | 1.390 (3) | C20—O21 | 1.429 (3) |
| C5—C6 | 1.440 (3) | O21—H21 | 0.83 (3) |
| C5—C7 | 1.418 (3) | Ni22—O23i | 2.0366 (17) |
| C6—C10 | 1.394 (3) | Ni22—O23 | 2.0366 (17) |
| C7—C8 | 1.381 (3) | Ni22—O24 | 2.0704 (15) |
| C7—Br16 | 1.8983 (19) | Ni22—O24i | 2.0704 (15) |
| C8—C9 | 1.474 (3) | Ni22—O25 | 2.0750 (14) |
| C8—O17 | 1.283 (3) | Ni22—O25i | 2.0750 (14) |
| C9—C10 | 1.397 (3) | O23—H23A | 0.9191 |
| C9—N18 | 1.335 (3) | O23—H23B | 0.9115 |
| C10—H10 | 0.9500 | O24—H24A | 0.9003 |
| C11—H11A | 0.9800 | O24—H24B | 0.9001 |
| C11—H11B | 0.9800 | O25—H25A | 0.9163 |
| C11—H11C | 0.9800 | O25—H25B | 0.9128 |
| S12—O13 | 1.4420 (17) | O26—H26 | 0.76 (3) |
| S12—O14 | 1.4592 (15) | ||
| C2—N1—C6 | 122.61 (17) | O15—S12—O14 | 113.06 (10) |
| C2—N1—C11 | 117.74 (18) | C9—N18—H18 | 118.8 |
| C6—N1—C11 | 119.64 (17) | C9—N18—C19 | 123.35 (18) |
| N1—C2—H2 | 119.8 | C19—N18—H18 | 117.7 |
| N1—C2—C3 | 120.4 (2) | N18—C19—H19A | 109.4 |
| C3—C2—H2 | 119.8 | N18—C19—H19B | 109.4 |
| C2—C3—C4 | 119.84 (19) | N18—C19—C20 | 111.15 (17) |
| C2—C3—S12 | 119.61 (17) | H19A—C19—H19B | 108.0 |
| C4—C3—S12 | 120.46 (15) | C20—C19—H19A | 109.4 |
| C3—C4—H4 | 119.7 | C20—C19—H19B | 109.4 |
| C5—C4—C3 | 120.66 (19) | C19—C20—H20A | 109.4 |
| C5—C4—H4 | 119.7 | C19—C20—H20B | 109.4 |
| C4—C5—C6 | 118.55 (19) | H20A—C20—H20B | 108.0 |
| C4—C5—C7 | 124.51 (18) | O21—C20—C19 | 111.00 (17) |
| C7—C5—C6 | 116.92 (18) | O21—C20—H20A | 109.4 |
| N1—C6—C5 | 117.92 (18) | O21—C20—H20B | 109.4 |
| N1—C6—C10 | 121.32 (18) | C20—O21—H21 | 109 (2) |
| C10—C6—C5 | 120.76 (19) | O23i—Ni22—O23 | 180.00 (4) |
| C5—C7—Br16 | 119.16 (15) | O23i—Ni22—O24 | 88.36 (7) |
| C8—C7—C5 | 125.37 (18) | O23—Ni22—O24i | 88.36 (7) |
| C8—C7—Br16 | 115.42 (15) | O23—Ni22—O24 | 91.64 (7) |
| C7—C8—C9 | 114.98 (19) | O23i—Ni22—O24i | 91.64 (7) |
| O17—C8—C7 | 126.71 (18) | O23i—Ni22—O25i | 89.39 (6) |
| O17—C8—C9 | 118.31 (18) | O23—Ni22—O25 | 89.39 (6) |
| C10—C9—C8 | 121.87 (19) | O23i—Ni22—O25 | 90.61 (6) |
| N18—C9—C8 | 114.94 (18) | O23—Ni22—O25i | 90.61 (6) |
| N18—C9—C10 | 123.18 (18) | O24—Ni22—O24i | 180.0 |
| C6—C10—C9 | 120.10 (18) | O24i—Ni22—O25 | 86.79 (6) |
| C6—C10—H10 | 120.0 | O24—Ni22—O25 | 93.21 (6) |
| C9—C10—H10 | 120.0 | O24—Ni22—O25i | 86.79 (6) |
| N1—C11—H11A | 109.5 | O24i—Ni22—O25i | 93.21 (6) |
| N1—C11—H11B | 109.5 | O25i—Ni22—O25 | 180.0 |
| N1—C11—H11C | 109.5 | Ni22—O23—H23A | 110.6 |
| H11A—C11—H11B | 109.5 | Ni22—O23—H23B | 113.0 |
| H11A—C11—H11C | 109.5 | H23A—O23—H23B | 105.3 |
| H11B—C11—H11C | 109.5 | Ni22—O24—H24A | 110.6 |
| O13—S12—C3 | 105.03 (10) | Ni22—O24—H24B | 109.2 |
| O13—S12—O14 | 112.98 (10) | H24A—O24—H24B | 106.3 |
| O13—S12—O15 | 113.89 (12) | Ni22—O25—H25A | 110.3 |
| O14—S12—C3 | 104.43 (9) | Ni22—O25—H25B | 116.3 |
| O15—S12—C3 | 106.39 (10) | H25A—O25—H25B | 105.9 |
| N1—C2—C3—C4 | 0.5 (3) | C6—N1—C2—C3 | −1.1 (3) |
| N1—C2—C3—S12 | −176.06 (14) | C6—C5—C7—C8 | 0.7 (3) |
| N1—C6—C10—C9 | −179.52 (17) | C6—C5—C7—Br16 | −176.56 (13) |
| C2—N1—C6—C5 | 1.8 (3) | C7—C5—C6—N1 | 179.55 (16) |
| C2—N1—C6—C10 | −178.59 (17) | C7—C5—C6—C10 | −0.1 (3) |
| C2—C3—C4—C5 | −0.7 (3) | C7—C8—C9—C10 | 1.1 (3) |
| C2—C3—S12—O13 | −156.31 (17) | C7—C8—C9—N18 | −178.14 (17) |
| C2—C3—S12—O14 | 84.58 (17) | C8—C9—C10—C6 | −0.6 (3) |
| C2—C3—S12—O15 | −35.24 (19) | C8—C9—N18—C19 | 175.77 (17) |
| C3—C4—C5—C6 | 1.4 (3) | C9—N18—C19—C20 | −166.55 (18) |
| C3—C4—C5—C7 | 179.87 (18) | C10—C9—N18—C19 | −3.5 (3) |
| C4—C3—S12—O13 | 27.10 (19) | C11—N1—C2—C3 | 179.54 (17) |
| C4—C3—S12—O14 | −92.01 (17) | C11—N1—C6—C5 | −178.90 (16) |
| C4—C3—S12—O15 | 148.17 (17) | C11—N1—C6—C10 | 0.8 (3) |
| C4—C5—C6—N1 | −1.9 (3) | S12—C3—C4—C5 | 175.84 (14) |
| C4—C5—C6—C10 | 178.47 (17) | Br16—C7—C8—C9 | 176.19 (13) |
| C4—C5—C7—C8 | −177.81 (18) | Br16—C7—C8—O17 | −3.0 (3) |
| C4—C5—C7—Br16 | 5.0 (3) | O17—C8—C9—C10 | −179.67 (17) |
| C5—C6—C10—C9 | 0.1 (3) | O17—C8—C9—N18 | 1.1 (3) |
| C5—C7—C8—C9 | −1.1 (3) | N18—C9—C10—C6 | 178.53 (17) |
| C5—C7—C8—O17 | 179.72 (18) | N18—C19—C20—O21 | 57.0 (2) |
| H··· | ||||
| O21—H21···O17ii | 0.83 (3) | 1.89 (3) | 2.707 (2) | 170 (3) |
| C11—H11 | 0.98 | 3.02 | 3.987 (2) | 171 |
| C19—H19 | 0.99 | 2.59 | 3.360 (3) | 134 |
| N18—H18···O25iv | 0.88 | 2.58 | 3.422 (2) | 159 |
| O23—H23 | 0.92 | 2.09 | 2.971 (2) | 161 |
| O23—H23 | 0.91 | 1.72 | 2.630 (2) | 172 |
| O24—H24 | 0.90 | 1.90 | 2.772 (2) | 162 |
| O24—H24 | 0.90 | 1.83 | 2.714 (2) | 165 |
| O25—H25 | 0.92 | 2.16 | 2.826 (2) | 129 |
| O25—H25 | 0.91 | 1.86 | 2.755 (2) | 165 |
| O26—H26···O14iii | 0.76 (3) | 2.03 (3) | 2.783 (2) | 175 (3) |