Literature DB >> 27917406

Genomics of Colorectal Cancer in African Americans.

Hassan Brim1, Hassan Ashktorab2.   

Abstract

Genome-wide studies are increasingly becoming a must, especially for complex diseases such as cancer where multiple genes and diverse molecular mechanisms are known to be involved in genes' function alteration. In this review, we report our latest genomic and epigenomic findings in African-American colorectal cancer patients. This population suffers a higher burden of the disease and most investigators in this field are looking for the underlying genetic and epigenetic targets that might be responsible for this disparity. We here report genome-wide copy number variations, single nucleotide mutations and DNA methylation findings that might be specific to this population.

Entities:  

Keywords:  Colorectal cancer; Copy number; DNA methylation; Epigenomics; Exome sequencing; Genomics; Single nucleotide mutations

Year:  2016        PMID: 27917406      PMCID: PMC5131637          DOI: 10.4172/2469-9853.1000133

Source DB:  PubMed          Journal:  Next Gener Seq Appl        ISSN: 2469-9853


  73 in total

1.  Homozygous PMS2 deletion causes a severe colorectal cancer and multiple adenoma phenotype without extraintestinal cancer.

Authors:  Olivia Will; Luis G Carvajal-Carmona; Patricia Gorman; Kimberley M Howarth; Angela M Jones; Guadalupe M Polanco-Echeverry; Jo-Anne Chinaleong; Thomas Günther; Andrew Silver; Susan K Clark; Ian Tomlinson
Journal:  Gastroenterology       Date:  2006-11-29       Impact factor: 22.682

2.  Genomic structure of the PIK3CG gene on chromosome band 7q22 and evaluation as a candidate myeloid tumor suppressor.

Authors:  Christian P Kratz; Brooke M Emerling; Jeannette Bonifas; Winfred Wang; Eric D Green; Michelle M Le Beau; Kevin M Shannon
Journal:  Blood       Date:  2002-01-01       Impact factor: 22.113

3.  DNA methylome profiling identifies novel methylated genes in African American patients with colorectal neoplasia.

Authors:  Hassan Ashktorab; M Daremipouran; Ajay Goel; Sudhir Varma; R Leavitt; Xueguang Sun; Hassan Brim
Journal:  Epigenetics       Date:  2014-01-17       Impact factor: 4.528

4.  Array CGH identifies distinct DNA copy number profiles of oncogenes and tumor suppressor genes in chromosomal- and microsatellite-unstable sporadic colorectal carcinomas.

Authors:  Silke Lassmann; Roland Weis; Frank Makowiec; Jasmine Roth; Mihai Danciu; Ulrich Hopt; Martin Werner
Journal:  J Mol Med (Berl)       Date:  2006-12-02       Impact factor: 4.599

5.  Prognostic values of tumor endothelial markers in patients with colorectal cancer.

Authors:  K A Rmali; M C A Puntis; W G Jiang
Journal:  World J Gastroenterol       Date:  2005-03-07       Impact factor: 5.742

6.  The EPHB6 receptor tyrosine kinase is a metastasis suppressor that is frequently silenced by promoter DNA hypermethylation in non-small cell lung cancer.

Authors:  Jun Yu; Etmar Bulk; Ping Ji; Antje Hascher; Moying Tang; Ralf Metzger; Alessandro Marra; Hubert Serve; Wolfgang E Berdel; Rainer Wiewroth; Steffen Koschmieder; Carsten Müller-Tidow
Journal:  Clin Cancer Res       Date:  2010-04-06       Impact factor: 12.531

7.  Comparative genomic hybridization reveals a specific pattern of chromosomal gains and losses during the genesis of colorectal tumors.

Authors:  T Ried; R Knutzen; R Steinbeck; H Blegen; E Schröck; K Heselmeyer; S du Manoir; G Auer
Journal:  Genes Chromosomes Cancer       Date:  1996-04       Impact factor: 5.006

8.  Colorectal cancer without high microsatellite instability and chromosomal instability--an alternative genetic pathway to human colorectal cancer.

Authors:  Reiping Tang; Chung Rong Changchien; Meng-Chih Wu; Chung-Wei Fan; Kwang-Wen Liu; Jinn-Shiun Chen; Huei-Tzu Chien; Ling-Ling Hsieh
Journal:  Carcinogenesis       Date:  2004-01-16       Impact factor: 4.944

9.  Genome-wide scan identifies a copy number variable region at 3q26 that regulates PPM1L in APC mutation-negative familial colorectal cancer patients.

Authors:  L F Thean; C Loi; K S Ho; P K Koh; K W Eu; P Y Cheah
Journal:  Genes Chromosomes Cancer       Date:  2010-02       Impact factor: 5.006

10.  Architecture of the human regulatory network derived from ENCODE data.

Authors:  Mark B Gerstein; Anshul Kundaje; Manoj Hariharan; Stephen G Landt; Koon-Kiu Yan; Chao Cheng; Xinmeng Jasmine Mu; Ekta Khurana; Joel Rozowsky; Roger Alexander; Renqiang Min; Pedro Alves; Alexej Abyzov; Nick Addleman; Nitin Bhardwaj; Alan P Boyle; Philip Cayting; Alexandra Charos; David Z Chen; Yong Cheng; Declan Clarke; Catharine Eastman; Ghia Euskirchen; Seth Frietze; Yao Fu; Jason Gertz; Fabian Grubert; Arif Harmanci; Preti Jain; Maya Kasowski; Phil Lacroute; Jing Jane Leng; Jin Lian; Hannah Monahan; Henriette O'Geen; Zhengqing Ouyang; E Christopher Partridge; Dorrelyn Patacsil; Florencia Pauli; Debasish Raha; Lucia Ramirez; Timothy E Reddy; Brian Reed; Minyi Shi; Teri Slifer; Jing Wang; Linfeng Wu; Xinqiong Yang; Kevin Y Yip; Gili Zilberman-Schapira; Serafim Batzoglou; Arend Sidow; Peggy J Farnham; Richard M Myers; Sherman M Weissman; Michael Snyder
Journal:  Nature       Date:  2012-09-06       Impact factor: 49.962

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  6 in total

1.  Confounders in Adenoma Detection at Initial Screening Colonoscopy: A Factor in the Assessment of Racial Disparities as a Risk for Colon Cancer.

Authors:  Yakira David; Lorenzo Ottaviano; Jihye Park; Sadat Iqbal; Michelle Likhtshteyn; Samir Kumar; Helen Lyo; Ayanna E Lewis; Brandon E Lung; Jesse T Frye; Li Huang; Ellen Li; Jie Yang; Laura Martello; Shivakumar Vignesh; Joshua D Miller; Michele Follen; Evan B Grossman
Journal:  J Cancer Ther       Date:  2019-04-09

2.  Genomics of Black American colon cancer disparities: An RNA sequencing (RNA-Seq) study from an academic, tertiary referral center.

Authors:  Ivy N Haskins; Bi-Dar Wang; James P Bernot; Edmund Cauley; Anelia Horvath; John H Marks; Norman H Lee; Samir Agarwal
Journal:  Surgery       Date:  2021-05-18       Impact factor: 3.982

3.  Evaluation of CSTB and DMBT1 expression in saliva of gastric cancer patients and controls.

Authors:  Maryam Koopaie; Marjan Ghafourian; Soheila Manifar; Shima Younespour; Mansour Davoudi; Sajad Kolahdooz; Mohammad Shirkhoda
Journal:  BMC Cancer       Date:  2022-04-30       Impact factor: 4.638

4.  Antigen Identification for Orphan T Cell Receptors Expressed on Tumor-Infiltrating Lymphocytes.

Authors:  Marvin H Gee; Arnold Han; Shane M Lofgren; John F Beausang; Juan L Mendoza; Michael E Birnbaum; Michael T Bethune; Suzanne Fischer; Xinbo Yang; Raquel Gomez-Eerland; David B Bingham; Leah V Sibener; Ricardo A Fernandes; Andrew Velasco; David Baltimore; Ton N Schumacher; Purvesh Khatri; Stephen R Quake; Mark M Davis; K Christopher Garcia
Journal:  Cell       Date:  2017-12-21       Impact factor: 41.582

5.  Determination of distinctive hypomethylated genes in African American colorectal neoplastic lesions.

Authors:  Hassan Ashktorab; Kareem Washington; Shatha Zarnogi; Afnan Shakoori; Sudhir Varma; Edward Lee; Babak Shokrani; Adeyinka Laiyemo; Hassan Brim
Journal:  Therap Adv Gastroenterol       Date:  2020-05-27       Impact factor: 4.409

6.  Race, Income, and Survival in Stage III Colon Cancer: CALGB 89803 (Alliance).

Authors:  Seohyuk Lee; Sui Zhang; Chao Ma; Fang-Shu Ou; Eric G Wolfe; Shuji Ogino; Donna Niedzwiecki; Leonard B Saltz; Robert J Mayer; Rex B Mowat; Renaud Whittom; Alexander Hantel; Al Benson; Daniel Atienza; Michael Messino; Hedy Kindler; Alan Venook; Cary P Gross; Melinda L Irwin; Jeffrey A Meyerhardt; Charles S Fuchs
Journal:  JNCI Cancer Spectr       Date:  2021-04-12
  6 in total

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