Andrea Zen1, Loïc M Roch1, Stephen J Cox2, Xiao Liang Hu1, Sandro Sorella3, Dario Alfè4, Angelos Michaelides1. 1. Thomas Young Centre and London Centre for Nanotechnology, 17-19 Gordon Street, London WC1H 0AH, United Kingdom; Department of Physics and Astronomy, University College London, Gower Street, London WC1E 6BT, United Kingdom. 2. Thomas Young Centre and London Centre for Nanotechnology, 17-19 Gordon Street, London WC1H 0AH, United Kingdom; Department of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, United Kingdom. 3. SISSA-International School for Advanced Studies, Via Bonomea 26, 34136 Trieste, Italy; INFM Democritos National Simulation Center, 34151 Trieste, Italy. 4. Thomas Young Centre and London Centre for Nanotechnology, 17-19 Gordon Street, London WC1H 0AH, United Kingdom; Department of Earth Sciences, University College London, Gower Street, London WC1E 6BT, United Kingdom.
Abstract
Clay minerals are ubiquitous in nature, and the manner in which they interact with their surroundings has important industrial and environmental implications. Consequently, a molecular-level understanding of the adsorption of molecules on clay surfaces is crucial. In this regard computer simulations play an important role, yet the accuracy of widely used empirical force fields (FF) and density functional theory (DFT) exchange-correlation functionals is often unclear in adsorption systems dominated by weak interactions. Herein we present results from quantum Monte Carlo (QMC) for water and methanol adsorption on the prototypical clay kaolinite. To the best of our knowledge, this is the first time QMC has been used to investigate adsorption at a complex, natural surface such as a clay. As well as being valuable in their own right, the QMC benchmarks obtained provide reference data against which the performance of cheaper DFT methods can be tested. Indeed using various DFT exchange-correlation functionals yields a very broad range of adsorption energies, and it is unclear a priori which evaluation is better. QMC reveals that in the systems considered here it is essential to account for van der Waals (vdW) dispersion forces since this alters both the absolute and relative adsorption energies of water and methanol. We show, via FF simulations, that incorrect relative energies can lead to significant changes in the interfacial densities of water and methanol solutions at the kaolinite interface. Despite the clear improvements offered by the vdW-corrected and the vdW-inclusive functionals, absolute adsorption energies are often overestimated, suggesting that the treatment of vdW forces in DFT is not yet a solved problem.
Clay minerals are ubiquitous in nature, and the manner in which they interact with their surroundings has important industrial and environmental implications. Consequently, a molecular-level understanding of the adsorption of molecules on clay surfaces is crucial. In this regard computer simulations play an important role, yet the accuracy of widely used empirical force fields (FF) and density functional theory (DFT) exchange-correlation functionals is often unclear in adsorption systems dominated by weak interactions. Herein we present results from quantum Monte Carlo (QMC) for water and methanol adsorption on the prototypical clay kaolinite. To the best of our knowledge, this is the first time QMC has been used to investigate adsorption at a complex, natural surface such as a clay. As well as being valuable in their own right, the QMC benchmarks obtained provide reference data against which the performance of cheaper DFT methods can be tested. Indeed using various DFT exchange-correlation functionals yields a very broad range of adsorption energies, and it is unclear a priori which evaluation is better. QMC reveals that in the systems considered here it is essential to account for van der Waals (vdW) dispersion forces since this alters both the absolute and relative adsorption energies of water and methanol. We show, via FF simulations, that incorrect relative energies can lead to significant changes in the interfacial densities of water and methanol solutions at the kaolinite interface. Despite the clear improvements offered by the vdW-corrected and the vdW-inclusive functionals, absolute adsorption energies are often overestimated, suggesting that the treatment of vdW forces in DFT is not yet a solved problem.
The
accurate treatment of the adsorption of molecules on surfaces
is a major challenge of materials modeling, with important applications
in nanotechnologies and science: heterogeneous catalysis, sensors,
corrosion, lubrication, friction, and coatings, to name but a few.
An important case to study is that of clays. Clay minerals are natural
aluminosilicates that find use in a wide variety of fields such as
medicine, adhesives, paints, and oil drilling.[1−9] They also act as catalysts to ice nucleation in the atmosphere[10] and help cleanse soils and groundwater through
adsorption of pollutants. A clear understanding of how molecules interact
with the surfaces of clays is of the utmost importance to understand,
improve, and control such processes.Reliable reference data
from theory and simulation are of intrinsic
value and often important as a complement to experiments.[11,12] Computer simulations of water–surface interactions, at the
molecular level, are often based on force fields (FF) and density
functional theory (DFT) approaches.[13−15] Although these techniques
are incredibly powerful and useful, there are cases where their accuracy
is not satisfactory. FF potentials have parameters that have to be
fit in order to reproduce experimental results or higher lever theoretical
benchmarks, and this is not always straightforward. DFT is traditionally
more accurate than FFs but at a larger computational cost. Unfortunately,
DFT results are highly sensitive to the choice of the exchange-correlation
(XC) functional used, and nowadays there are countless XC functionals
to choose from.[16,17] In the field of materials science,
the description of weak bonding interactions, and in particular London
dispersion forces, is one of the most important challenges. Immense
progress has been made in this area recently;[18,19] however, there is no rigorous way to systematically improve XC functionals,
and as a result validation with alternative methods is needed. Of
the various high level reference methods available,[20−28] quantum Monte Carlo (QMC) is a powerful approach for obtaining benchmark
values for solids, surfaces, and large molecular systems. QMC, within
the fixed node diffusion Monte Carlo (DMC) approach, has already been
used to tackle interesting materials science problems that have been
beyond the reach of DFT (see, e.g., refs (29−42)). This has provided reference data which have exposed shortcomings
in existing FF models and DFT XC functionals, which in turn aids the
development of such approaches.In this paper we will use two
QMC approaches to investigate molecular
adsorption on a clay surface, namely, DMC and lattice regularized
diffusion Monte Carlo[27,28] (LRDMC). The particular clay
we will examine is kaolinite (Al4Si4O10(OH)8), as shown in Figure . Since the first outline of the kaolinite crystal
structure by Pauling in 1930,[43] numerous
structural studies using X-ray and neutron powder diffraction,[44−47] X-ray single crystal,[48] and electron
diffraction methods,[49] as well as theoretical
studies[50−53] have been carried out on kaolinite. Consequently it is one of the
most suitable aluminosilicate clays to assess the performance of various
theoretical methods. In addition, when looking at adsorption processes
on kaolinite, cleavage along the (001) basal plane leads to exposure
of either aluminate or silicate faces (Figure ). The aluminate (AlOH) face is terminated
in hydroxyl groups and as a result is regarded as hydrophilic, whereas
the silicate (SiO2) face which exposes saturated Si–O
groups is considered to be hydrophobic. The distinct chemical nature
of these two surfaces means that adsorbates will interact differently
with them, making kaolinite an interesting case study for understanding
the role of vdW forces on the adsorption at clay mineral surfaces.
Figure 1
Representation
of the kaolinite structure. The hydrogens are sketched
in white, the oxygens in red, the silicons by yellow tetrahedra, and
the aluminums by pink octahedra. The conventional unit cell is indicated
by the blue line. The figure on the left illustrates the layered bulk.
The figures on the right are the hydroxyl-terminated face (top) and
the silicate-terminated face (bottom). Various adsorption sites on
the hydroxyl- and silicate-terminated face are labeled.
Representation
of the kaolinite structure. The hydrogens are sketched
in white, the oxygens in red, the silicons by yellow tetrahedra, and
the aluminums by pink octahedra. The conventional unit cell is indicated
by the blue line. The figure on the left illustrates the layered bulk.
The figures on the right are the hydroxyl-terminated face (top) and
the silicate-terminated face (bottom). Various adsorption sites on
the hydroxyl- and silicate-terminated face are labeled.In what follows, we will provide benchmark values
for the adsorption
of water and methanol molecules at the pristine hydroxyl- and silicate-terminated
(001) faces of kaolinite, by using DMC and LRDMC. Then, we probe DFT
XC functionals by considering a range of generalized gradient approximation
(GGA) functionals, hybrid functionals, and dispersion-corrected density
functionals which account for vdW forces. In the case of molecules
adsorbed on kaolinite we find that the bare GGAs and hybrids are quite
unreliable: as expected adsorption energies are underestimated, but
more importantly, the relative adsorption energies of water versus
methanol do not even agree with QMC. Moreover, on the silicate-terminated
face the molecules hardly bind at all and move quite far from the
surface during geometry optimizations. Accounting for vdW forces improves
adsorption energies significantly and stabilizes the structures. However,
most of the vdW-corrected and vdW-inclusive functionals predict adsorption
energies which are slightly too large compared to QMC. This indicated
that there remains room for improvement in terms of how vdW forces
are handled in DFT.The remainder of this paper is organized
as follows. In Section 2 we outline the key
computational details
of our simulations. Since a range of techniques has been used, for
brevity the more detailed descriptions of the computational setups
are provided in the Supporting Information. QMC and DFT evaluations of the adsorption of water and methanol
at both (001) faces of kaolinite are reported and discussed in Section 3. Finally, we summarize our results and
draw conclusions in Section 4.
Methods and Computational Setup
Adsorption
Energy Evaluation
Adsorption
was examined on a single layer of kaolinite, a system with 2D periodicity
along the A and B axes as indicated in Figure . The simulated supercell was 1 × 2
the conventional unit cell of bulk kaolinite (ca. 10.38 Å ×
9.01 Å) and is comprised of 8 aluminums, 8 silicons, 36 oxygens,
and 16 hydrogens for the kaolinite slab plus the atoms of the adsorbed
molecule. Note that with ca. 300 electrons the simulations are large
for QMC calculations.The adsorption energy, EadsM@X, of
the molecule M at the face X of the kaolinite layer, where M can either
be the water (H2O) or the methanol (MeOH) and X can be
the hydroxyl-terminated (AlOH) face or the silicate-terminated (SiO2) face, can be evaluated in two ways: the first method, hereafter
called complex-minus-fragments, is computed aswhere Eslab+M@X is the total energy for
the system with M at the X-face of the kaolinite
slab, and Eslab and EM are the total energies of the isolated slab and the
isolated molecule M, respectively. The second method, hereafter called complex-minus-far, is computed aswhere Eslab–M is the total energy
of a system where the kaolinite slab and the
molecule M are far enough apart that their interaction is negligible.
The two methods are equivalent if and only if: (i) the size effects
due to the periodicity of the system are negligible and (ii) the electronic
structure calculations are performed with methods that are exactly
size consistent. If these conditions are not satisfied in general
we have that Eslab–M ≠ EM + Eslab, meaning
that eqs and 2 provide different evaluations of the adsorption
energies. In particular, whenever size effects are detected, the complex-minus-far method usually benefits from a larger
error cancellation. On the other hand, in cases where size effects
are negligible and electronic structure methods are size consistent,
there are no residual interactions between the molecule and the periodic
partners, and then the complex-minus-fragments method
is usually to be preferred. The reason for that is the computational
cost: for a system with N electrons the computation
is proportional to Nγ, with γ
> 1 (e.g., in DFT γ is typically between 2 and 3 and in QMC
between 3 and 4), so the cost for calculations of Eslab and EM is cheaper than Eslab–M. Moreover, when several adsorption
energies need to be evaluated, Eslab is
calculated only once, whereas a different calculation of Eslab–M has to be performed for each molecule M.
QMC Calculations
The two QMC approaches
used are DMC and LRDMC. They are both projection Monte Carlo methods:
they can access the electronic ground state energy of the system by
iteratively projecting an initial trial wave function ψT into the ground state, with the constraint that the projected
wave function Φ has the same nodal surface of an appropriately
chosen guiding function ψG (fixed node approximation).[20,54] Both the trial and the guiding wave functions are parametrized functions,
and they have to be the best approximation of the ground state that
we can provide (given the constraint of their ansatz). Thus, usually
they are taken such that ψT = ψG = ψVMC, where ψVMC is the best
function obtained within a variational Monte Carlo approach, with
the variational parameters optimized in order to minimize either the
variational energy or the variance. Whenever ψG has
the exact nodal surface, the approach is exact; otherwise, it gives
the best approximation of the ground state given the fixed node constraint.In projection Monte Carlo approaches there is a second approximation
in how the projection is performed, and it is different in DMC and
LRDMC. The projection in DMC comes from the imaginary time Schrödinger
equation; it is implemented as an imaginary time evolution, where
a time step τ has to be chosen. The chosen τ is a trade-off
between accuracy and computational cost: exact results are obtained
for τ → 0, but the computational cost is ∝1/τ.
The finite time-step error can be controlled by performing several
calculations with different values of τ and finally extrapolating
to the continuum limit τ → 0. However, in big systems
like those considered here, the extrapolation is impractical and sometimes
unfeasible or unreliable,[55] but it is sufficient
to consider the results for a τ small enough that the expected
finite-time error is smaller than the required accuracy. Here, we
have chosen τ in order to have an expected time-step error smaller
than the stochastic error of the evaluations (see Section I in the Supporting Information). On the other hand, LRDMC
is based on the spatial discretization of the molecular Hamiltonian
on a lattice of mesh size a, and it resorts to the
projection scheme used also in the Green function Monte Carlo algorithm.[56,57] The error induced by the finite mesh size a is
analogous to the time-step error appearing in standard DMC calculations.
LRDMC preserves the variational principle even when used in combination
with nonlocal pseudopotentials[27] (PPs),
and it is size consistent for any value of the mesh a, maintaining its efficiency even for systems with a large number
of electrons.[28]Both DMC and LRDMC
provide excellent benchmark values for weakly
interacting systems, as established in a number of studies.[29−36,39,58,59] We used here a standard setup, described
in detail in the Supporting Information. The stochastic error associated with the QMC evaluations of the
adsorption energy is ca. 20 meV. The systems under consideration are
too large for a QMC-based structural optimization, even at the variational
level, so the reference structures were those obtained from the PBE-D3
functional, as described in Section 3.1.
As we will see in Section 3, PBE-D3 configurations
are in good agreement with those obtained by all the other vdW-inclusive
functionals, thus the bias given by the use of PBE-D3 configurations
is expected to be small compared to the stochastic error of the DMC
evaluation.There is one aspect of QMC simulations that deserves
special care
in this specific system, namely, the finite-size errors (FSEs).[60−64] QMC is a many-body method, and in contrast to (effective) one-particle
methods such as DFT, QMC cannot simply exploit Bloch’s theorem
in calculations for extended periodic systems. FSEs can be taken into
account by performing simulations in larger periodic supercells, through
the twist-average method,[60] corrections
to the Ewald energy,[61] or the Kwee, Zhang,
Krakauer (KZK) method.[62] In this work we
have used the KZK method (see Section 3 in the Supporting Information).
DFT Calculations
There is by now
an almost limitless variety of DFT XC functionals that we could examine.[65] Here we restrict ourselves to the LDA functional;[66] two GGA functionals, PBE[67,68] and RPBE;[69] two hybrid functionals, PBE0[70] and B3LYP;[71−74] three vdW-corrected PBE functionals
PBE-D2,[75] PBE-D3,[76] (both from Grimme, D3 correction with “zero-dampling”[77]), and PBE+vdW(TS) from Tkatchenko and Scheffler;[78] two vdW-corrected hybrid functionals, PBE0-D3
and B3LYP-D3[76] (both from Grimme[76]); and four self-consistent nonlocal functionals
(often called vdW-inclusive functionals), the original vdW-DF from
Dion (also named revPBE-vdW),[79,80] the second generation
vdW-DF2,[81] as well as optPBE-vdW[82] and optB86b-vdW[83] from Klimeš et al. We stress that the latter four vdW-inclusive
functionals are actually based on GGAs and basically differ from the
vdW-corrected GGA functionals (e.g., PBE-D2, PBE-D3, and PBE+vdW(TS))
only in the way the dispersion energy is approximated.[18,19] Other functionals and vdW corrections have been tested, and results
obtained using a comprehensive set of approaches is reported in Table
S1 of the Supporting Information. Adsorption
energies were evaluated using the complex-minus-fragments method (see eq ),
but the results are the same as those obtained with the complex-minus-far
method, as expected. Further details about the setup of the
DFT calculations are reported in Section 4 of the Supporting Information.
Molecular
Dynamics Simulations
We
also performed a series of molecular dynamics simulations using classical
force fields for aqueous water–methanol solutions on kaolinite.
The kaolinite slab was modeled as a single sheet of kaolinite (approximately
31 × 36 Å) using the CLAYFF force field,[84] and the OH bond lengths were constrained using the P-LINCS
algorithm.[85] Above this slab 538 TIP4P/2005[86] water and 230 OPLS/UA
methanol[87] molecules were randomly placed
in order to create a liquid film on the kaolinite surface. The standard
Lorentz–Berthelot mixing rules were used to compute cross-interactions,
except to adjust the adsorption energies as detailed below. Using
the GROMACS 4.5 simulation package,[88] constant
volume and temperature dynamics were propagated using a leapfrog integrator
and a Nosè-Hoover chain thermostat, along with replica-exchange
among eight replicas with temperatures ranging from 275 to 310 K in
5 K intervals. Real-space interactions were truncated at 9 Å
with corrections to the energy applied, and particle-mesh Ewald was
used to account for long-range electrostatics[89,90] with the corrections for the slab geometry of the system.[91] A time step of 2 fs was used and molecular dynamics
simulations performed for at least 11 ns, with the first nanosecond
being disregarded as equilibration.Adsorption energies were
computed after geometry optimization using the complex-minus-fragments method. This was done in three ways: First, the adsorption energy
was computed by applying the standard mixing rules. This yielded adsorption
energies of 642 and 640 meV for water and methanol, respectively,
and ΔEads = −2 meV. Second,
the strength of the Lennard-Jones interaction between the CH3 group of methanol and the oxygen atoms of the kaolinite OH groups
was adjusted such that ΔEads matched
that of PBE. Finally, the same was done to match ΔEads obtained by DMC.
Results
Reference Structures for Water and Methanol
Adsorbed on Kaolinite
Water adsorption on the hydroxyl-terminated
face of kaolinite has been studied experimentally[92−94] and theoretically,[95−101] whereas adsorption on the silicate-terminated face is less well
studied. Very little is known about methanol adsorption on either
face. In the following, the most stable adsorption structures identified
for water and methanol on the two kaolinite surfaces are presented.On each surface a range of adsorption sites were considered, as
indicated in Figure . According to the number of H-bonds formed between the adsorbate
and the surface, the adsorption sites can be classified into three
categories: 3-fold, 2-fold, and 1-fold sites. The most stable configurations
obtained, using DFT with the PBE-D3 functional, are shown in Figures A–2H. These structures have been taken as the reference
for DMC, LRDMC, and the other DFT calculations. In addition, starting
from the reference PBE-D3 structures, we have relaxed the geometries
for each of the different functionals considered, as shown in Figures A–3D. Figure E compares the distance of the molecules from the slab as
obtained with different functionals.
Figure 2
Adsorption of water and methanol on the
hydroxyl-terminated and
the silicate-terminated faces of kaolinite (side view in first row,
top view in second row). Geometries are relaxed using the PBE-D3 functional
and have been taken as reference for the other calculations. The adsorbed
molecule on kaolinite is depicted in cyan and gray, and the H-bonds
are represented by the blue dashed lines.
Figure 3
Panels A, B, C, and D show the most stable DFT structures for the
adsorption of water and methanol on the hydroxyl- and silicate-terminated
faces of kaolinite, provided by the different XC functionals considered.
The color scheme for the various functionals is blue for PBE, cyan
for RPBE, white for PBE-D2, black for PBE-D3 (that is also the reference
for QMC calculations), pink for PBE+vdW(TS), violet for vdW-DF, green
for vdW-DF2, gray for optPBE-vdW, and yellow for optB86b-vdW. Panel
E shows the height of the center-of-mass of the adsorbed molecules
from the average surface plane defined by the surface oxygens for
the different XC functionals. The four dashed horizontal lines correspond
to the values for the reference PBE-D3 structures.
Adsorption of water and methanol on the
hydroxyl-terminated and
the silicate-terminated faces of kaolinite (side view in first row,
top view in second row). Geometries are relaxed using the PBE-D3 functional
and have been taken as reference for the other calculations. The adsorbed
molecule on kaolinite is depicted in cyan and gray, and the H-bonds
are represented by the blue dashed lines.Panels A, B, C, and D show the most stable DFT structures for the
adsorption of water and methanol on the hydroxyl- and silicate-terminated
faces of kaolinite, provided by the different XC functionals considered.
The color scheme for the various functionals is blue for PBE, cyan
for RPBE, white for PBE-D2, black for PBE-D3 (that is also the reference
for QMC calculations), pink for PBE+vdW(TS), violet for vdW-DF, green
for vdW-DF2, gray for optPBE-vdW, and yellow for optB86b-vdW. Panel
E shows the height of the center-of-mass of the adsorbed molecules
from the average surface plane defined by the surface oxygens for
the different XC functionals. The four dashed horizontal lines correspond
to the values for the reference PBE-D3 structures.Concerning water at the hydroxyl-terminated face
(H2O on AlOH), all structures initially put in 2-fold and
1-fold sites
(A5–A8) moved to the 3-fold site A1. This preference for the
A1 site agrees with previous DFT studies with local[99] and semilocal[96] XC functionals.
In the most stable configuration, shown in Figures A and 2E, the C2 axis of the water molecule lies almost parallel
to the plane of the surface. The water molecule donates one H-bond
(OH distance of 1.69 Å) to and accepts two H-bonds (2.01 and
2.04 Å) from the surface (PBE-D3 values).Let us now consider
the adsorption of methanol at the hydroxyl-terminated
face (MeOH on AlOH). One way of viewing methanol is as a water molecule
with one of its hydrogen atoms replaced by a methyl group. This leads
to two possible types of interaction with the surface: (i) hydrogen
bond formation with the hydroxyl functional group and (ii) dispersion
interactions arising from the −CH3 group. All calculations
in which the methanol began parallel to the surface ended with the
methanol perpendicular to the surface, maximizing the distance between
the −CH3 group and the kaolinite. The −CH3 group can therefore be considered a “spectator group”
that does not participate directly in the adsorption on the surface.
The adsorption of methanol is therefore very similar to that of water,
and indeed, we find that A1 is the most favorable site, with the methanol
donating one H-bond to and accepting two from the surface. As was
the case for the water structure, the H-bond donated by the methanol
is much stronger than the two H-bonds it accepts: 1.68 vs 1.97 and
2.03 Å, respectively, with the PBE-D3 functional. The most stable
configuration is shown in Figures B and 2F.As noted above,
adsorption of water at the silicate-terminated
face (H2O on SiO2) is less well studied than
adsorption at the hydroxyl-terminated face.[98−101] Of the six adsorption sites
(S1–S6) considered here, the 1-fold S5 site turned out to be
the most stable at the GGA level, and the 2-fold S1 generally is the
most stable for the vdW-corrected and vdW-inclusive functionals. The
PBE-D3 structure is depicted in Figures C and 2G.The
most stable structure found for methanol at the silicate-terminated
face (MeOH on SiO2) using the PBE-D3 functional is shown
in Figures D and 2H. The leading interaction here is dispersion; there
is no H-bond-like interaction because the OH group of the methanol
is parallel to the surface of the slab.
Benchmark
Results from DMC and LRDMC
The DMC and LRDMC results for
water and methanol adsorption on the
two faces of kaolinite are reported in Table . As mentioned in the previous section, “bare”
DMC and LRDMC evaluations have to be corrected for finite-size effects,
and in our LRDMC simulations there is also an unphysical dipole interaction
between slabs due to the 3D periodicity employed. The DMC calculations
have been performed with 2D periodicity and so do not suffer from
the latter problem. The bare and corrected results are reported in Table . From this it can
be seen that our best estimates of the adsorption energy of water
on the hydroxyl-terminated face are −648 ± 18 meV with
DMC and −675 ± 14 meV with LRDMC. For methanol our best
estimates of the adsorption energy are −694 ± 18 meV with
DMC and −701 ± 13 meV with LRDMC. We notice that we are
in the chemisorption regime both for water and for methanol, although
the adsorption energy of methanol is slightly larger. Note that for
both molecules the DMC and LRDMC evaluations are in good agreement,
with the differences falling within the stochastic error of the evaluations.
This shows that fixed-node projection QMC schemes are robust approaches:
they are only slightly affected by the actual computational setup
and implementation. Nonetheless, two slightly different adsorption
energies for each case are obtained, and we should choose only one
of them to use as our benchmark. We feel that in the specific case
considered here the DMC values are likely to be more reliable since
they have been obtained in 2D, as opposed to the LRDMC results which
have been corrected for the dipole in the 3D cell. Moreover, the reported
LRDMC evaluations use eq , which has larger FSE than the reported DMC evaluations, which use eq .
Table 1
DMC and
LRDMC Evaluations (in meV)
of the Adsorption Energy of Water and Methanol Molecules on the Hydroxyl-
and Silicate-Terminated Faces of Kaolinite and the Water Minus Methanol
Difference, ΔEads = EadsH – EadsMeOH, for Each Face of Kaolinite (ΔEads is Positive When Methanol Is More Strongly
Adsorbed, Negative Otherwise)a
hydroxyl-terminated face
silicate-terminated face
H2O
MeOH
ΔEads
H2O
MeOH
ΔEads
bare DMC (eq 2)
–632 ± 18
–677 ± 18
45 ± 25
–172 ± 23
–236 ± 18
64 ± 29
FSE correction
–16
–17
+1
–12
–14
+2
corrected DMC
–648 ± 18
–694 ± 18
46 ± 25
–184 ± 23
–250 ± 18
66 ± 29
bare LRDMC (eq 1)
–674 ± 14
–736 ± 13
64 ± 13
FSE correction
+35
+73
–38
dipole
correction
–36
–38
+2
corrected LRDMC
–675 ± 14
–701 ± 13
26 ± 13
As discussed
in the text, bare
DMC and LRDMC results are affected by finite-size errors (see Section
3 and Table S2 in the Supporting Information) that we have estimated and corrected the adsorption energies for
accordingly. In addition, bare LRDMC evaluations are affected by an
unphysical dipole–dipole interaction between the periodic slabs
(because in this case 2D periodicity was not available, and we had
to use 3D periodicity), thus we have included a dipole interaction
correction. LRDMC simulations have not been performed for adsorption
on the SiO2 face.
As discussed
in the text, bare
DMC and LRDMC results are affected by finite-size errors (see Section
3 and Table S2 in the Supporting Information) that we have estimated and corrected the adsorption energies for
accordingly. In addition, bare LRDMC evaluations are affected by an
unphysical dipole–dipole interaction between the periodic slabs
(because in this case 2D periodicity was not available, and we had
to use 3D periodicity), thus we have included a dipole interaction
correction. LRDMC simulations have not been performed for adsorption
on the SiO2 face.Having compared the results of the two QMC approaches on the hydroxyl-terminated
face, we have only performed a DMC evaluation on the silicate-terminated
face. The DMC adsorption energy at the silicate-terminated face is
−184 ± 23 meV for water and −250 ± 18 meV
for methanol. The methanol adsorbs more strongly than water, as for
the hydroxyl-terminated face; however, in this case the adsorption
is weaker, and we are in the physisorption regime.
Evaluation of DFT XC Functionals: Adsorption
Energies and Structures
We now examine how the various DFT
XC functionals considered in this study perform for water and methanol
adsorption on the two faces of kaolinite.
Water Adsorption
on the Hydroxyl-Terminated
Face of Kaolinite
In Table and Figure we summarize the adsorption energies obtained with the different
density functionals. At the GGA level PBE and RPBE give significantly
different adsorption energies, with RPBE providing a value that is
roughly 50% that of PBE. In line with the smaller adsorption energy
we also see that the bonds the molecule makes with the surface with
the RPBE functional are considerably longer than what is obtained
with PBE. Specifically, with RPBE the two H bonds accepted from the
surface are 2.30 and 2.36 Å, and the one donated is 1.81 Å,
versus 2.03, 2.06, and 1.70 Å with PBE. Including dispersion
interactions does not drastically change the geometry of the adsorbed
water monomer at the hydroxyl-terminated face: the bond lengths at
the PBE-D2, PBE-D3, PBE+vdW(TS), and opt-B86b-vdW level are slightly
shortened, but they remain within 0.05 Å of the PBE structure.
PBE-D2 predicts the shortest distance from the surface and the shortest
H-bonds. The other functionals give H-bond lengths between the values
provided by PBE and RPBE. From the shortest to the longest interaction
distance, the functionals are ranked in the following order: PBE-D2
< PBE-D3 ∼ optb86b-vdW ∼ PBE+vdW(TS) < PBE <
optPBE-vdW < vdW-DF2 < vdW-DF < RPBE. This trend roughly
follows the sequence of adsorption energy predicted by the functionals
and is also consistent with previous studies of DFT XC functionals
for hydrogen-bonded systems.[58,102−104] Relaxation from the PBE-D3 geometry (performed for all the GGA and
GGA+vdW functionals) results in rather small increases in adsorption
energies. The maximum difference is observed for vdW-DF, with an increase
of 36 meV upon relaxation.
Table 2
Adsorption Energy
of Water, EH, and of Methanol, EMeOH, on the Hydroxyl-Terminated
Face of Kaolinite and Adsorption Energy Difference, ΔEads = EadsH – EadsMeOH, between Water and Methanol, Obtained with DMC and Several DFT XC
Functionalsa
hydroxyl-terminated face
method
EH2Oads
EMeOHads
ΔEads
DMC
–648 ± 18
–694 ± 18
46 ± 25
LDA
–1102
–1138
36
GGA functionals
PBE
–607(−608)
–614(−616)
7(8)
RPBE
–360(−381)
–354(−380)
–6(−1)
hybrid functionals
PBE0
–599
–615
16
B3LYP
–524
–528
4
GGA+vdW functionals
PBE-D2
–822(−826)
–879(−882)
57(56)
PBE-D3
–767
–829
62
PBE+vdW(TS)
–769(−764)
–841(−833)
72(69)
vdW-DF
–530(−566)
–597(−635)
66(69)
vdW-DF2
–616(−641)
–658(−686)
42(44)
optPBE-vdW
–689(−699)
–767(−779)
78(80)
optB86b-vdW
–751(−752)
–835(−836)
84(85)
hybrid+vdW functionals
PBE0-D3
–768
–840
72
B3LYP-D3
–776
–849
72
The best performing
functional
is indicated in bold. All energy values are in meV. Energies have
been obtained on PBE-D3 optimized structures, but in parentheses we
also report the adsorption energies when geometries are fully relaxed
consistently for each GGA and GGA+vdW functional.
Figure 4
Adsorption energies on kaolinite obtained by
various XC functionals
and DMC, for water on the hydroxyl-face (H2O on AlOH, blue
upper triangles), methanol on the hydroxyl-face (MeOH on AlOH, red
squares), water on the silicate face (H2O on SiO2, cyan lower triangles), and methanol on the silicate face (MeOH
on SiO2, orange diamonds). Filled points represent the
values with the reference structures (obtained using PBE-D3), and
empty points (reported only for GGA and GGA+vdW functionals) correspond
to relaxed structures for the specific functional. The solid lines
are the reference DMC adsorption energies, and the shaded areas show
the stochastic error.
The best performing
functional
is indicated in bold. All energy values are in meV. Energies have
been obtained on PBE-D3 optimized structures, but in parentheses we
also report the adsorption energies when geometries are fully relaxed
consistently for each GGA and GGA+vdW functional.Adsorption energies on kaolinite obtained by
various XC functionals
and DMC, for water on the hydroxyl-face (H2O on AlOH, blue
upper triangles), methanol on the hydroxyl-face (MeOH on AlOH, red
squares), water on the silicate face (H2O on SiO2, cyan lower triangles), and methanol on the silicate face (MeOH
on SiO2, orange diamonds). Filled points represent the
values with the reference structures (obtained using PBE-D3), and
empty points (reported only for GGA and GGA+vdW functionals) correspond
to relaxed structures for the specific functional. The solid lines
are the reference DMC adsorption energies, and the shaded areas show
the stochastic error.A comparison with the QMC adsorption energies shows that
vdW-DF2
and optPBE-vdW yield the best agreement, with the former providing
a slightly underestimated adsorption energy (by −32 ±
18 meV) and the latter a slightly overestimated one (by 41 ±
18 meV). It also appears that the two GGA functionals (PBE and RPBE),
the two hybrid functionals (PBE0 and B3LYP), and vdW-DF underestimate
the interaction energy, whereas all the other functionals (PBE-D2,
PBE-D3, PBE+vdW(TS), optB86b-vdW, PBE0-D3, and B3LYP-D3) overestimate
the interaction. In particular, evaluations of the adsorption using
vdW-corrected hybrid functionals do not seem to improve significantly
compared to the GGA+vdW approaches.
Methanol
Adsorption on the Hydroxyl-Terminated
Face of Kaolinite
A careful investigation shows that the
ordering of the functionals according to the H-bond lengths and to
the adsorption energy is almost the same as that observed for water.
The only exception is vdW-DF, which for methanol gives a larger adsorption
energy than that obtained with PBE. The comparison with DMC confirms,
as for water, that the best performing functionals are vdW-DF2 and
optPBE-vdW. Again the GGA functionals and vdW-DF underestimate the
adsorption energy, while all the other functionals (PBE-D2, PBE-D3,
PBE+vdW(TS), optB86b-vdW, PBE0-D3, and B3LYP-D3) overestimate the
interaction. As for the previous system, vdW-corrected hybrid functionals
do not seem to improve significantly with respect to the GGA+vdW approaches.Before discussing adsorption on the silicate face of kaolinite,
we briefly compare water and methanol adsorption. An important finding
from the results presented in Table is that with the GGA functionals the adsorption energies
of water and methanol are similar (e.g., Eads,PBEH = −608 meV and Eads,PBEMeOH = −616 meV), but upon inclusion
of dispersion interactions methanol is stabilized to a greater extent
(e.g., Eads, optPBE–vdWH = −699 meV and Eads,optPBE–vdWMeOH = −779 meV). This is apparent in Figure , where the difference
in adsorption between water and methanol is plotted. Therefore, even
though the methyl group is considered a spectator, its vdW interaction
with the surface is non-negligible, and it is clearly desirable to
properly account for dispersion interactions in these systems. DMC
confirms the reliability of the vdW-inclusive functionals on this
issue as DMC also finds that methanol binds more strongly than water.
Figure 5
Difference
in adsorption energy, between water and methanol on
the hydroxyl-terminated (left panel) and silicate-terminated (right
panel) faces of kaolinite, as obtained from various XC functionals
and DMC. Positive values mean that methanol binds more strongly than
water. Filled points represent the values for the configurations optimized
using PBE-D3, and empty points (reported only for GGA and GGA+vdW
functionals) correspond to relaxed structures for the specific functional.
The solid lines are the reference DMC adsorption energies, and the
shaded areas show the stochastic error.
Difference
in adsorption energy, between water and methanol on
the hydroxyl-terminated (left panel) and silicate-terminated (right
panel) faces of kaolinite, as obtained from various XC functionals
and DMC. Positive values mean that methanol binds more strongly than
water. Filled points represent the values for the configurations optimized
using PBE-D3, and empty points (reported only for GGA and GGA+vdW
functionals) correspond to relaxed structures for the specific functional.
The solid lines are the reference DMC adsorption energies, and the
shaded areas show the stochastic error.
Water Adsorption on the Silicate-Terminated
Face of Kaolinite
In Table we present the results from all the functionals for
adsorption on the silicate-terminated face. Irrespective of which
functional is used the adsorption energies obtained are in the physisorption
regime. Consequently, the inclusion of vdW forces is expected to have
a more obvious impact than on the hydroxyl-terminated face.
Table 3
Adsorption Energy of Water, EH, and of Methanol, EMeOH, on the Silicate-Terminated
Face of Kaolinite and Adsorption Energy Difference, ΔEads = EadsH – EadsMeOH, between Water and Methanol, Obtained with DMC and Several DFT XC
Functionalsa
silicate-terminated
face
Method
EH2Oads
EMeOHads
ΔEads
DMC
–184 ± 23
–250 ± 18
66 ± 29
LDA
–295
–315
20
GGA functionals
PBE
–85(−92)
–93(−118)
8(27)
RPBE
25(−41)
21(−185)
4(144)
hybrid functionals
PBE0
–75
–86
11
B3LYP
–24
–19
–5
GGA+vdW functionals
PBE-D2
–262(−276)
–331(−340)
69(64)
PBE-D3
–248
–314
66
PBE+vdW(TS)
–271(−273)
–356(−362)
85(89)
vdW-DF
-183(−193)
–297(−303)
115(110)
vdW-DF2
–210(−214)
-292(−295)
82(81)
optPBE-vdW
–248(−252)
–369(−372)
121(121)
optB86b-vdW
–236(−238)
–350(−358)
115(119)
hybrid+vdW functionals
PBE0-D3
–241
–311
69
B3LYP-D3
–273
–345
71
The best performing
functionals
are indicated in bold. All energy values are in meV. Energies have
been obtained on PBE-D3 optimized structures, but in parentheses we
also report the adsorption energies when geometries are fully relaxed
consistently for each GGA and GGA+vdW functional.
The best performing
functionals
are indicated in bold. All energy values are in meV. Energies have
been obtained on PBE-D3 optimized structures, but in parentheses we
also report the adsorption energies when geometries are fully relaxed
consistently for each GGA and GGA+vdW functional.As on the hydroxyl-terminated face,
RPBE gives an adsorption energy
that is noticeably less exothermic than PBE. In the case of the vdW-DFs
we see an across-the-board stabilization relative to the GGA functionals.
Like at the hydroxyl-terminated face, vdW-DF and vdW-DF2 give the
weakest adsorption energy of the vdW-DFs. The PBE-D2 and PBE+vdW(TS)
functionals give the strongest overall adsorption energy, with 276
and 273 meV, respectively, followed by optPBE-vdW, PBE-D3, and optB86b-vdW
with values close to 250 meV. Overall, the spread of the vdW-based
evaluations is much smaller than for the hydroxyl-terminated face.
Whereas at the hydroxyl-terminated face the adsorption structure was
altered only moderately upon inclusion of vdW, at the silicate-terminated
face more significant changes are observed. Specifically, the GGA
functionals predict the molecule to be much further away from the
surface than the vdW inclusive functionals do. This difference is
also reflected in Figure , if we consider the difference between the adsorption energies
of the GGA functionals at the PBE-D3 geometry and when the structures
are relaxed. On the other hand, the geometries provided by the vdW-inclusive
approaches are in very good agreement with PBE-D3, so Eads evaluated on either the PBE-D3 geometry or on the
relaxed structures are similar.Comparison with DMC supports
the general reliability of the vdW-corrected
and vdW-inclusive approaches over the bare GGA and hybrid functionals.
However, it also shows that almost all the GGA+vdW and the two hybrid+vdW
functionals overestimate the adsorption energy. Similar overestimates
have been seen recently for physisorbed water on hexagonal boron-nitride.[33] On this surface the best performance is seen
for the vdW-DF and the vdW-DF2 functionals, both of them being in
agreement with DMC, given the DMC stochastic error. It is also interesting
to note that even though water still binds preferentially to the hydroxyl-terminated
face the relative adsorption strengths are significantly altered:
the ratio EadsH/EadsH is 6.6 for PBE, 9.3 for RPBE, ca. 3 for the vdW-inclusive
functionals, and 3.5 ± 0.5 at the DMC level.
Methanol Adsorption on the Silicate-Terminated
Face of Kaolinite
Similar to water, we again expect dispersion
interactions to play more of a role at the silicate-terminated than
at the hydroxyl-terminated face. Indeed, we again observe big differences
between functionals including or not the vdW interaction. In the most
stable structure found using the PBE-D3 functional there is no hydrogen-bond-like
interaction, and methanol is parallel to the surface of the slab (see Figure D). The geometry
at the GGA level has the methanol molecule found at a much larger
distance from the surface, as depicted in Figure D.As on the hydroxyl-terminated face,
the degree of stabilization due to dispersion interactions is greater
for methanol than it is for water. At the GGA level, water and methanol
bind with similar interaction strengths (methanol binds more strongly
by 27 meV at the PBE level), but when vdW is accounted for in the
functional we observe that methanol binds more strongly by 64 meV
(for PBE-D2) to 121 meV (for optPBE-vdW), as shown in Figure .The comparison with
DMC shows that in this case the GGA functionals
underestimate the adsorption energy and that all the GGA+vdW and hybrid+vdW
functionals overestimate Eads. The best
agreement is again obtained for the vdW-DF and vdW-DF2 functionals,
the former overestimating the interaction by 47 ± 18 meV and
the latter by 42 ± 18 meV. The ratio EadsMeOH@AlOH/EadsMeOH@SiO is 5.2 for PBE, 2.1 for RPBE, between 2.1 and 2.6 for
the vdW-corrected and vdW-inclusive functionals, and 2.8 ± 0.2
at the DMC level.
Discussion and Conclusions
In this paper we have used QMC to examine the adsorption of water
and methanol on the hydroxyl- and silicate-terminated (001) faces
of kaolinite. The QMC results on the hydroxyl-terminated face have
been obtained independently with two different fixed-node projection
QMC methods: DMC and LRDMC. The two methods differ in terms of algorithms
(DMC is based on a time-discretization approximation, LRDMC on a space-discretization
approximation), implementation (DMC calculations have been performed
using the CASINO code; LRDMC using the TurboRVB code), and setup (for
instance, different PPs, basis sets, and Jastrow terms). Nonetheless,
both approaches produce results in good agreement with the small differences
between the approaches coming within the stochastic error of the evaluations.QMC results indicate that both water and methanol adsorb on the
hydroxyl-terminated face, forming three H-bonds, with an interaction
energy larger than 0.6 eV. The adsorption on the silicate-terminated
face is much weaker, smaller than 0.3 eV. In both cases the methanol
binds slightly more strongly than water.As discussed, the QMC
results provide a benchmark that can help
in further understanding of how other computationally cheaper methods
perform for adsorption. Specifically, we have compared them with the
results provided by a selection of commonly used XC functionals in
DFT (covering GGA, hybrid, vdW-corrected GGA, vdW-corrected hybrid,
and vdW-inclusive functionals). This shows that the vdW-corrected
and vdW-inclusive functionals predict adsorption energies that are
considerably larger than those calculated using the bare GGA or hybrid
functionals, but the degree of stabilization is system dependent.
As discussed, in the systems under consideration in this work the
QMC references indicate that bare GGA and hybrid-based predictions
are often underestimated, whereas approaches that account for the
vdW interaction yield results in qualitative agreement with QMC, although
the absolute value of the adsorption energy can be overestimated,
particularly on the silicate-terminated face. Overall, the best results
are provided by vdW-DF2, and among the vdW-corrected approaches we
notice good performance from PBE-D3. Inclusion of exact exchange does
not appear to lead to any improvement for the systems considered here;
for instance, results from PBE-D3 and PBE0-D3 are almost identical.
The GGA+vdW functionals, although based on GGA, perform better than
the bare GGAs also in terms of geometries. Indeed, on the silicate-terminated
face (where the interaction is weaker) structure relaxation performed
with the vdW-corrected and vdW-inclusive functionals leads to very
similar configurations, whereas with the GGAs the adsorbates sometimes
strayed away from the surface. Looking forward there certainly still
seems to be scope for further improvements in the treatment of these
systems with DFT. Of the functional considered vdW-DF2 offers the
best performance, but it does not convincingly deliver chemical accuracy
for all four adsorption scenarios considered. Approaches such as Hamada’s
revised vdW-DF2 functional[105] or Tkatchenko’s
many-body dispersion[106] would be interesting
to explore.The comparison between the adsorption of water and
methanol is
also interesting. At the GGA level there is very little difference
in adsorption energies, whereas methanol becomes more strongly bound
when vdW interactions are accounted for. As clay minerals can cleanse
groundwater through the uptake of pollutants, the relative adsorption
energies with respect to water is a highly important quantity. Even
for methanol, which is one of the simplest organic molecules able
to form a hydrogen bond, we see that including vdW interactions can
significantly alter the adsorption energy relative to water; on the
hydroxyl-terminated face, water and methanol bind with similar energies,
but inclusion of dispersion forces tips the balance in favor of methanol.Before closing we note that we have examined the consequences of
altering the relative interaction strength of water and methanol with
kaolinite through a series of classical molecular dynamics simulations
of liquid water–methanol solutions on kaolinite. The results
of these simulations are shown in Figures A–6B. Specifically
in Figure B we show
results obtained with water and methanol interaction parameters that
use standard Lorentz–Berthelot mixing rules, values matching
PBE, or values matching DMC. As can be seen Figure B, with the DMC value of ΔEads the adsorption of methanol yields a density profile
with a much more pronounced first peak compared to the ΔEads, corresponding to PBE or standard Lorentz–Berthelot
mixing rules. Thus, we see that the standard approach for exploring
aqueous solutions at a clay surface with force fields leads to a rather
poor description of the interface. This effect is likely to become
even more significant as the size of the organic tail of the adsorbate
increases and demonstrates the importance of an accurate modeling
of dispersion interactions when exploring wet interfaces of environmental
relevance. The ability to accurately incorporate nonlocal dispersion
interactions is therefore extremely important if one aims to model
environmentally relevant adsorption processes on kaolinite and other
clays.
Figure 6
Molecular dynamics simulations of a water–methanol mixture
on the hydroxyl-terminated face of kaolinite. Panel A: Snapshot of
the simulation system, where the methanol molecules are shown in red
and the water molecules as glassy blue circles, and the kaolinite
slab is the same as in Figure . The black lines show part of the periodic simulation cell
boundaries. Panel B: Density profiles of methanol above the kaolinite
surface, for the eight replicas with temperatures ranging from 275
to 310 K, obtained for values of ΔEads (namely, the difference between adsorption energy of water and methanol
(see text)) corresponding to Lorentz–Bethelot, PBE, and DMC.
“z” is the distance from the average
position of the top layer of oxygen atoms in the kaolinite surface.
It is clear that an appropriate choice of ΔEads can significantly affect the density of the water–methanol
solution at the interface.
Molecular dynamics simulations of a water–methanol mixture
on the hydroxyl-terminated face of kaolinite. Panel A: Snapshot of
the simulation system, where the methanol molecules are shown in red
and the water molecules as glassy blue circles, and the kaolinite
slab is the same as in Figure . The black lines show part of the periodic simulation cell
boundaries. Panel B: Density profiles of methanol above the kaolinite
surface, for the eight replicas with temperatures ranging from 275
to 310 K, obtained for values of ΔEads (namely, the difference between adsorption energy of water and methanol
(see text)) corresponding to Lorentz–Bethelot, PBE, and DMC.
“z” is the distance from the average
position of the top layer of oxygen atoms in the kaolinite surface.
It is clear that an appropriate choice of ΔEads can significantly affect the density of the water–methanol
solution at the interface.
Authors: Anouar Benali; Luke Shulenburger; Nichols A Romero; Jeongnim Kim; O Anatole von Lilienfeld Journal: J Chem Theory Comput Date: 2014-08-12 Impact factor: 6.006
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Authors: Yasmine S Al-Hamdani; Péter R Nagy; Andrea Zen; Dennis Barton; Mihály Kállay; Jan Gerit Brandenburg; Alexandre Tkatchenko Journal: Nat Commun Date: 2021-06-24 Impact factor: 14.919