| Literature DB >> 27904835 |
Jakub P Fichna1, Anna Potulska-Chromik2, Przemysław Miszta3, Maria Jolanta Redowicz4, Anna M Kaminska2, Cezary Zekanowski1, Sławomir Filipek3.
Abstract
Myofibrillar myopathy (MFM) is a group of inherited muscular disorders characterized by myofibrils dissolution and abnormal accumulation of degradation products. So far causative mutations have been identified in nine genes encoding Z-disk proteins, including αB-crystallin (CRYAB), a small heat shock protein (also called HSPB5). Here, we report a case study of a 63-year-old Polish female with a progressive lower limb weakness and muscle biopsy suggesting a myofibrillar myopathy, and extra-muscular multisystemic involvement, including cataract and cardiomiopathy. Five members of the proband's family presented similar symptoms. Whole exome sequencing followed by bioinformatic analysis revealed a novel D109A mutation in CRYAB associated with the disease. Molecular modeling in accordance with muscle biopsy microscopic analyses predicted that D109A mutation influence both structure and function of CRYAB due to decreased stability of oligomers leading to aggregate formation. In consequence disrupted sarcomere cytoskeleton organization might lead to muscle pathology. We also suggest that mutated RQDE sequence of CRYAB could impair CRYAB chaperone-like activity and promote aggregation of lens crystallins.Entities:
Keywords: Bioinformatics; CRYAB; HSPB5; Molecular dynamics; Mutation; Myofibrillar myopathy
Year: 2016 PMID: 27904835 PMCID: PMC5124346 DOI: 10.1016/j.bbacli.2016.11.004
Source DB: PubMed Journal: BBA Clin ISSN: 2214-6474
Fig. 1Analysis of the proband's muscle. A) Hematoxylin/eosin (HE) staining; B) Trichrome staining; C) Succinate dehydrogenase (SDH) staining; D) and E) Electron micrographs; and F) Immunostaining with anti-CRYAB antibody. Arrows in A) and B) point at the dark material; in C) point to lobulated fibers, and in D) and E) point to electron dense material. Bars: 10 μm in A–C and F, and 500 nm in D and E.
Suppl. Fig. 1Pedigree diagram of the proband's family. The arrow points to the proband.
Fig. 2Circular hexamer of CRYAB. A) WT crystal structure. The particular monomers are colored yellow and green, alternatively. D109 residue is colored in purple and shown as balls. B), C) and D) CRYAB oligomeric structure after 600 ns of MD simulation. D109 residue is labeled in purple. Prim marked positions in adjacent monomer (in yellow). The structures: WT, D109H, and D109A, respectively. Mutations rearrange the network of local interactions (D109A to the largest extent) which leads to destabilization (partial unfolding) of monomer-monomer interfaces and in consequence to decreased stability of the whole oligomer.
Putative causative or phenotype-modifying genetic variants identified in the proband. SNVs and indels that passed initial filtering (Phred quality score of at least 30, missense/nonsense/indel mutations for coding sequences = MODERATE or HIGH impact) and filtering for “muscle weakness” in HPO terms related to the gene. cDNA and protein alterations are reported in the following transcripts: ENST00000460472 (TTN), ENST00000533475 (CRYAB), ENST00000337435 (NIPA1), ENST00000261866 (SPG11).
| Chr | Position | dbSNP | REF | ALT | Type | Impact | Gene | HGVS.c | HGVS.p | Genotype | ExAC MAF | In lab MAF | Mutation count |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2 | 179597600 | rs72648937 | C | T | Missense | MODERATE | TTN | c.15352G > A | p.Val5118Met | het | 0.00564 | 0.021 | 4/188 |
| 2 | 179599667 | rs72648927 | G | C | Missense | MODERATE | TTN | c.14033C > G | p.Pro4678Arg | het | 0.01062 | 0.021 | 4/188 |
| 4 | 184596309 | rs140871779 | CT | C | Intronic/splice | LOW | TRAPPC11 | het | 0.1467 | 0.064 | 12/188 | ||
| 11 | 111779690 | . | T | G | Missense/splice | MODERATE | CRYAB | c.326A > C | p.Asp109Ala | het | – | 0.005 | 1/188 |
| 14 | 68194090 | rs58392863 | AG | A | Downstream | LOW | ZFYVE26 | het | – | 0.016 | 3/188 | ||
| 14 | 68233171 | . | G | A | Intronic/splice | LOW | ZFYVE26 | het | – | 0.005 | 1/188 | ||
| 15 | 23086364 | rs531550505 | GGCC | G | Inframe deletion | MODERATE | NIPA1 | c.45_47delGGC | p.Ala16del | het | 0.01442 | 0.149 | 28/188 |
| 15 | 44907562 | rs111347025 | T | C | Missense/splice | MODERATE | SPG11 | c.3037A > G | p.Lys1013Glu | het | 0.00993 | 0.011 | 2/188 |
Chr: chromosome; Position: genomic position within a chromosome; dbSNP: record in Database of Single Nucleotide Polymorphism; REF: reference base; ALT: alternative base (base change); Type: mutation type; Impact: simple estimation of putative impact by snpeff; Gene: gene symbol; HGVS.c: coding RNA sequence variant; HGVS.p: protein sequence variant; genotype: zygosity; EXAC MAF: minor allele frequency in EXAC database; in-house MAF: minor allele frequency within 94 samples in our in-house database; mutation count: number of alleles with a mutation in our in house database.
Alignment of CRYAB amino acid sequence (H. sapiens positions: 98–120) with homologs' sequences. Aspertic acid residue affected in the proband and its evolutionary conserved homologs marked in red.