Literature DB >> 27904822

Targeted sequencing approach to identify genetic mutations in Nasu-Hakola disease.

Jun-Ichi Satoh1, Motoaki Yanaizu1, Youhei Tosaki1, Kenji Sakai1, Yoshihiro Kino1.   

Abstract

Nasu-Hakola disease (NHD) is a rare autosomal recessive disorder characterized by sclerosing leukoencephalopathy and multifocal bone cysts, caused by a loss-of-function mutation of either TYROBP (DAP12) or TREM2. TREM2 and DAP12 constitute a receptor/adaptor signaling complex expressed exclusively on osteoclasts, dendritic cells, macrophages, and microglia. Premortem molecular diagnosis of NHD requires genetic analysis of both TYROBP and TREM2, in which 20 distinct NHD-causing mutations have been reported. Due to genetic heterogeneity, it is often difficult to identify the exact mutation responsible for NHD. Recently, the revolution of the next-generation sequencing (NGS) technology has greatly advanced the field of genome research. A targeted sequencing approach allows us to investigate a selected set of disease-causing genes and mutations in a number of samples within several days. By targeted sequencing using the TruSight One Sequencing Panel, we resequenced genetic mutations of seven NHD cases with known molecular diagnosis and two control subjects. We identified homozygous variants of TYROBP or TREM2 in all NHD cases, composed of a frameshift mutation of c.141delG in exon 3 of TYROBP in four cases, a missense mutation of c.2T>C in exon 1 of TYROBP in two cases, or a splicing mutation of c.482+2T>C in intron 3 of TREM2 in one case. The results of targeted resequencing corresponded to those of Sanger sequencing. In contrast, causative variants were not detected in control subjects. These results indicate that targeted sequencing is a useful approach to precisely identify genetic mutations responsible for NHD in a comprehensive manner.

Entities:  

Keywords:  DAP12; Nasu-Hakola disease; TREM2; TYROBP; targeted sequencing

Year:  2016        PMID: 27904822      PMCID: PMC5116862          DOI: 10.5582/irdr.2016.01064

Source DB:  PubMed          Journal:  Intractable Rare Dis Res        ISSN: 2186-3644


  20 in total

1.  Nasu-Hakola disease with a splicing mutation of TREM2 in a Japanese family.

Authors:  Y Numasawa; C Yamaura; S Ishihara; S Shintani; M Yamazaki; H Tabunoki; J-I Satoh
Journal:  Eur J Neurol       Date:  2010-12-22       Impact factor: 6.089

2.  Comparative study of aCGH and Next Generation Sequencing (NGS) for chromosomal microdeletion and microduplication screening.

Authors:  Claudio Dello Russo; Gianluca Di Giacomo; Pietro Cignini; Francesco Padula; Lucia Mangiafico; Alvaro Mesoraca; Laura D'Emidio; Megan R McCluskey; Arianna Paganelli; Claudio Giorlandino
Journal:  J Prenat Med       Date:  2014 Apr-Jun

Review 3.  TREM2 variants: new keys to decipher Alzheimer disease pathogenesis.

Authors:  Marco Colonna; Yaming Wang
Journal:  Nat Rev Neurosci       Date:  2016-02-25       Impact factor: 34.870

4.  Neuropsychiatric and genetic aspects of a new hereditary disease characterized by progressive dementia and lipomembranous polycystic osteodysplasia.

Authors:  H P Hakola
Journal:  Acta Psychiatr Scand Suppl       Date:  1972

5.  Somatic mosaicism of a CDKL5 mutation identified by next-generation sequencing.

Authors:  Takeshi Kato; Naoya Morisada; Hiroaki Nagase; Masahiro Nishiyama; Daisaku Toyoshima; Taku Nakagawa; Azusa Maruyama; Xue Jun Fu; Kandai Nozu; Hiroko Wada; Satoshi Takada; Kazumoto Iijima
Journal:  Brain Dev       Date:  2015-03-27       Impact factor: 1.961

6.  Effective diagnosis of genetic disease by computational phenotype analysis of the disease-associated genome.

Authors:  Tomasz Zemojtel; Sebastian Köhler; Luisa Mackenroth; Marten Jäger; Jochen Hecht; Peter Krawitz; Luitgard Graul-Neumann; Sandra Doelken; Nadja Ehmke; Malte Spielmann; Nancy Christine Oien; Michal R Schweiger; Ulrike Krüger; Götz Frommer; Björn Fischer; Uwe Kornak; Ricarda Flöttmann; Amin Ardeshirdavani; Yves Moreau; Suzanna E Lewis; Melissa Haendel; Damian Smedley; Denise Horn; Stefan Mundlos; Peter N Robinson
Journal:  Sci Transl Med       Date:  2014-09-03       Impact factor: 17.956

7.  Targeted sequencing and identification of genetic variants in sporadic inclusion body myositis.

Authors:  Conrad C Weihl; Robert H Baloh; Youjin Lee; Tsui-Fen Chou; Sara K Pittman; Glenn Lopate; Peggy Allred; Jennifer Jockel-Balsarotti; Alan Pestronk; Matthew B Harms
Journal:  Neuromuscul Disord       Date:  2015-01-06       Impact factor: 4.296

8.  Variant of TREM2 associated with the risk of Alzheimer's disease.

Authors:  Thorlakur Jonsson; Hreinn Stefansson; Stacy Steinberg; Ingileif Jonsdottir; Palmi V Jonsson; Jon Snaedal; Sigurbjorn Bjornsson; Johanna Huttenlocher; Allan I Levey; James J Lah; Dan Rujescu; Harald Hampel; Ina Giegling; Ole A Andreassen; Knut Engedal; Ingun Ulstein; Srdjan Djurovic; Carla Ibrahim-Verbaas; Albert Hofman; M Arfan Ikram; Cornelia M van Duijn; Unnur Thorsteinsdottir; Augustine Kong; Kari Stefansson
Journal:  N Engl J Med       Date:  2012-11-14       Impact factor: 91.245

9.  Mutations in TREM2 lead to pure early-onset dementia without bone cysts.

Authors:  Eliane Chouery; Valérie Delague; Anne Bergougnoux; Salam Koussa; Jean-Louis Serre; André Mégarbané
Journal:  Hum Mutat       Date:  2008-09       Impact factor: 4.878

10.  TREM2 variants in Alzheimer's disease.

Authors:  Rita Guerreiro; Aleksandra Wojtas; Jose Bras; Minerva Carrasquillo; Ekaterina Rogaeva; Elisa Majounie; Carlos Cruchaga; Celeste Sassi; John S K Kauwe; Steven Younkin; Lilinaz Hazrati; John Collinge; Jennifer Pocock; Tammaryn Lashley; Julie Williams; Jean-Charles Lambert; Philippe Amouyel; Alison Goate; Rosa Rademakers; Kevin Morgan; John Powell; Peter St George-Hyslop; Andrew Singleton; John Hardy
Journal:  N Engl J Med       Date:  2012-11-14       Impact factor: 91.245

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  2 in total

Review 1.  TREM2 in Neurodegenerative Diseases.

Authors:  Taylor R Jay; Victoria E von Saucken; Gary E Landreth
Journal:  Mol Neurodegener       Date:  2017-08-02       Impact factor: 14.195

2.  Pharmacogenetics: An Important Part of Drug Development with A Focus on Its Application.

Authors:  J T Oates; D Lopez
Journal:  Int J Biomed Investig       Date:  2018-05-27
  2 in total

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