Literature DB >> 27902881

The chimeric nature of the genomes of marine magnetotactic coccoid-ovoid bacteria defines a novel group of Proteobacteria.

Boyang Ji1, Sheng-Da Zhang1,2, Wei-Jia Zhang1,2,3, Zoe Rouy4,5,6, François Alberto1,2, Claire-Lise Santini1,2, Sophie Mangenot7, Séverine Gagnot1, Nadège Philippe1, Nathalie Pradel2,8, Lichen Zhang1, Sébastien Tempel1, Ying Li2,3, Claudine Médigue4,5,6, Bernard Henrissat9, Pedro M Coutinho9, Valérie Barbe7, Emmanuel Talla1, Long-Fei Wu1,2.   

Abstract

Magnetotactic bacteria (MTB) are a group of phylogenetically and physiologically diverse Gram-negative bacteria that synthesize intracellular magnetic crystals named magnetosomes. MTB are affiliated with three classes of Proteobacteria phylum, Nitrospirae phylum, Omnitrophica phylum and probably with the candidate phylum Latescibacteria. The evolutionary origin and physiological diversity of MTB compared with other bacterial taxonomic groups remain to be illustrated. Here, we analysed the genome of the marine magneto-ovoid strain MO-1 and found that it is closely related to Magnetococcus marinus MC-1. Detailed analyses of the ribosomal proteins and whole proteomes of 390 genomes reveal that, among the Proteobacteria analysed, only MO-1 and MC-1 have coding sequences (CDSs) with a similarly high proportion of origins from Alphaproteobacteria, Betaproteobacteria, Deltaproteobacteria and Gammaproteobacteria. Interestingly, a comparative metabolic network analysis with anoxic network enzymes from sequenced MTB and non-MTB successfully allows the eventual prediction of an organism with a metabolic profile compatible for magnetosome production. Altogether, our genomic analysis reveals multiple origins of MO-1 and M. marinus MC-1 genomes and suggests a metabolism-restriction model for explaining whether a bacterium could become an MTB upon acquisition of magnetosome encoding genes.
© 2016 Society for Applied Microbiology and John Wiley & Sons Ltd.

Entities:  

Mesh:

Year:  2017        PMID: 27902881     DOI: 10.1111/1462-2920.13637

Source DB:  PubMed          Journal:  Environ Microbiol        ISSN: 1462-2912            Impact factor:   5.491


  14 in total

1.  Origin of magnetotaxis: Vertical inheritance or horizontal transfer?

Authors:  Sishuo Wang; Youhua Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-12       Impact factor: 11.205

2.  Accumulation and Dissolution of Magnetite Crystals in a Magnetically Responsive Ciliate.

Authors:  Caroline L Monteil; Nicolas Menguy; Sandra Prévéral; Alan Warren; David Pignol; Christopher T Lefèvre
Journal:  Appl Environ Microbiol       Date:  2018-04-02       Impact factor: 4.792

3.  Phylogenomics of the Phylum Proteobacteria: Resolving the Complex Relationships.

Authors:  Vaibhav Sharma; Amit Vashishtha; Arsha Liz M Jos; Akshita Khosla; Nirmegh Basu; Rishabh Yadav; Amit Bhatt; Akshanshi Gulani; Pushpa Singh; Sanidhya Lakhera; Mansi Verma
Journal:  Curr Microbiol       Date:  2022-06-15       Impact factor: 2.188

4.  A Novel Isolate of Spherical Multicellular Magnetotactic Prokaryotes Has Two Magnetosome Gene Clusters and Synthesizes Both Magnetite and Greigite Crystals.

Authors:  Kaixuan Cui; Hongmiao Pan; Jianwei Chen; Jia Liu; Yicong Zhao; Si Chen; Wenyan Zhang; Tian Xiao; Long-Fei Wu
Journal:  Microorganisms       Date:  2022-04-28

5.  Complete Genome Sequence of Magnetospirillum sp. ME-1, a Novel Magnetotactic Bacterium Isolated from East Lake, Wuhan, China.

Authors:  Linfeng Ke; Pengming Liu; Shan Liu; Meiying Gao
Journal:  Genome Announc       Date:  2017-08-24

6.  Comparative Genome Analysis Provides Insights into Both the Lifestyle of Acidithiobacillus ferrivorans Strain CF27 and the Chimeric Nature of the Iron-Oxidizing Acidithiobacilli Genomes.

Authors:  Tam T T Tran; Sophie Mangenot; Ghislaine Magdelenat; Emilie Payen; Zoé Rouy; Hassiba Belahbib; Barry M Grail; D Barrie Johnson; Violaine Bonnefoy; Emmanuel Talla
Journal:  Front Microbiol       Date:  2017-06-13       Impact factor: 5.640

7.  Genomic expansion of magnetotactic bacteria reveals an early common origin of magnetotaxis with lineage-specific evolution.

Authors:  Wei Lin; Wensi Zhang; Xiang Zhao; Andrew P Roberts; Greig A Paterson; Dennis A Bazylinski; Yongxin Pan
Journal:  ISME J       Date:  2018-03-26       Impact factor: 10.302

8.  Genome-Based Metabolic Reconstruction of a Novel Uncultivated Freshwater Magnetotactic coccus "Ca. Magnetaquicoccus inordinatus" UR-1, and Proposal of a Candidate Family "Ca. Magnetaquicoccaceae".

Authors:  Veronika Koziaeva; Marina Dziuba; Pedro Leão; Maria Uzun; Maria Krutkina; Denis Grouzdev
Journal:  Front Microbiol       Date:  2019-10-02       Impact factor: 5.640

9.  A Journey across Genomes Uncovers the Origin of Ubiquinone in Cyanobacteria.

Authors:  Mauro Degli Esposti
Journal:  Genome Biol Evol       Date:  2017-11-01       Impact factor: 3.416

10.  Unravelling the diversity of magnetotactic bacteria through analysis of open genomic databases.

Authors:  Maria Uzun; Lolita Alekseeva; Maria Krutkina; Veronika Koziaeva; Denis Grouzdev
Journal:  Sci Data       Date:  2020-07-31       Impact factor: 6.444

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.