Literature DB >> 27902209

Fimbriiglobus ruber gen. nov., sp. nov., a Gemmata-like planctomycete from Sphagnum peat bog and the proposal of Gemmataceae fam. nov.

Irina S Kulichevskaya1, Anastasia A Ivanova1, Olga I Baulina2, W Irene C Rijpstra3, Jaap S Sinninghe Damsté4,3, Svetlana N Dedysh1.   

Abstract

An aerobic, budding, dark pink to red-pigmented bacterium was isolated from an acidic boreal Sphagnum peat bog and designated strain SP5T. Cells of this strain were non-motile spheres that were uniformly covered with crateriform pits and fimbria, and tended to form aggregates during growth in liquid media. Strain SP5T was capable of growth between pH 4.0 and pH 6.8 (optimum at pH 5.5-6.0) and at temperatures between 10 and 30 °C (optimum at 20-25 °C). The preferred growth substrates were sugars and some heteropolysaccharides. The major fatty acids were C20 : 1ω9c, C16 : 1ω9c and C16 : 0, and the major polar lipid was trimethylornithine. Cells contained also significant amounts of bound (ω-1)OH-C30 : 1 fatty acid. The quinone was menaquinone-6, and the G+C content of the DNA was 60.7 mol%. Strain SP5T was a member of the order Planctomycetales and belonged to the phylogenetic lineage defined by the genus Gemmata. It displayed 88 and 89 % 16S rRNA gene sequence similarity to Gemmata obscuriglobusUQM 2246T and 'Gemmata massiliana' IIL30, 89 % to Zavarzinella formosa A10T and 86 % to Telmatocola sphagniphila SP2T. However, strain SP5T differed from members of these genera by cell morphology, substrate utilization pattern and fatty acid composition. Based on these data, the novel isolate should be considered as representing a novel species of a new genus of planctomycetes, for which the name Fimbriiglobus ruber gen. nov., sp. nov, is proposed. The type strain is SP5T (=LMG 29572T=VKM B-3045T). We also suggest the establishment of a novel family, Gemmataceaefam. nov., which includes the phylogenetically related genera Gemmata, Zavarzinella, Telmatocola and Fimbriiglobus.

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Year:  2017        PMID: 27902209     DOI: 10.1099/ijsem.0.001598

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  8 in total

1.  Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes.

Authors:  Marina García-López; Jan P Meier-Kolthoff; Brian J Tindall; Sabine Gronow; Tanja Woyke; Nikos C Kyrpides; Richard L Hahnke; Markus Göker
Journal:  Front Microbiol       Date:  2019-09-23       Impact factor: 5.640

Review 2.  The Planctomycetia: an overview of the currently largest class within the phylum Planctomycetes.

Authors:  Inês Rosado Vitorino; Olga Maria Lage
Journal:  Antonie Van Leeuwenhoek       Date:  2022-01-17       Impact factor: 2.271

3.  Genome Analysis of Fimbriiglobus ruber SP5T, a Planctomycete with Confirmed Chitinolytic Capability.

Authors:  Nikolai V Ravin; Andrey L Rakitin; Anastasia A Ivanova; Alexey V Beletsky; Irina S Kulichevskaya; Andrey V Mardanov; Svetlana N Dedysh
Journal:  Appl Environ Microbiol       Date:  2018-03-19       Impact factor: 4.792

Review 4.  Planctomycetes as Host-Associated Bacteria: A Perspective That Holds Promise for Their Future Isolations, by Mimicking Their Native Environmental Niches in Clinical Microbiology Laboratories.

Authors:  Odilon D Kaboré; Sylvain Godreuil; Michel Drancourt
Journal:  Front Cell Infect Microbiol       Date:  2020-11-30       Impact factor: 5.293

Review 5.  Trimethylornithine Membrane Lipids: Discovered in Planctomycetes and Identified in Diverse Environments.

Authors:  Eli K Moore
Journal:  Metabolites       Date:  2021-01-12

6.  PVCbase: an integrated web resource for the PVC bacterial proteomes.

Authors:  Nicola Bordin; Juan Carlos González-Sánchez; Damien P Devos
Journal:  Database (Oxford)       Date:  2018-01-01       Impact factor: 3.451

7.  Frigoriglobus tundricola gen. nov., sp. nov., a psychrotolerant cellulolytic planctomycete of the family Gemmataceae from a littoral tundra wetland.

Authors:  Irina S Kulichevskaya; Anastasia A Ivanova; Daniil G Naumoff; Alexey V Beletsky; W Irene C Rijpstra; Jaap S Sinninghe Damsté; Andrey V Mardanov; Nikolai V Ravin; Svetlana N Dedysh
Journal:  Syst Appl Microbiol       Date:  2020-07-30       Impact factor: 4.022

8.  Glacier shrinkage will accelerate downstream decomposition of organic matter and alters microbiome structure and function.

Authors:  Tyler J Kohler; Stilianos Fodelianakis; Grégoire Michoud; Leïla Ezzat; Massimo Bourquin; Hannes Peter; Susheel Bhanu Busi; Paraskevi Pramateftaki; Nicola Deluigi; Michail Styllas; Matteo Tolosano; Vincent de Staercke; Martina Schön; Jade Brandani; Ramona Marasco; Daniele Daffonchio; Paul Wilmes; Tom J Battin
Journal:  Glob Chang Biol       Date:  2022-04-01       Impact factor: 13.211

  8 in total

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