Literature DB >> 27900388

Data-Driven Modeling for Precision Medicine in Pediatric Acute Liver Failure.

Ruben Zamora1,2, Yoram Vodovotz1,2, Qi Mi1, Derek Barclay1, Jinling Yin1, Simon Horslen3, David Rudnick4, Kathleen M Loomes5, Robert H Squires6.   

Abstract

Absence of early outcome biomarkers for Pediatric Acute Liver Failure (PALF) hinders medical and liver transplant decisions. We sought to define dynamic interactions among circulating inflammatory mediators to gain insights into PALF outcome sub-groups. Serum samples from 101 participants in the PALF study, collected over the first 7 days following enrollment, were assayed for 27 inflammatory mediators. Outcomes (Spontaneous survivors [S, n=61], Non-survivors [NS, n=12], and liver transplant patients [LTx, n=28]) were assessed at 21 days post-enrollment. Dynamic interrelations among mediators were defined using data-driven algorithms. Dynamic Bayesian Network inference identified a common network motif with HMGB1 as a central node in all patient sub-groups. The networks in S and LTx were similar, and differed from NS. Dynamic Network Analysis suggested similar dynamic connectivity in S and LTx, but a more highly-interconnected network in NS that increased with time. A Dynamic Robustness Index calculated to quantify how inflammatory network connectivity changes as a function of correlation stringency differentiated all three patient sub-groups. Our results suggest that increasing inflammatory network connectivity is associated with non-survival in PALF, and may ultimately lead to better patient outcome stratification.

Entities:  

Keywords:  biomarker; computational analysis; inflammation; liver disease; networks

Year:  2016        PMID: 27900388      PMCID: PMC5263056          DOI: 10.2119/molmed.2016.00183

Source DB:  PubMed          Journal:  Mol Med        ISSN: 1076-1551            Impact factor:   6.354


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