| Literature DB >> 27899915 |
Teng Zhao1, Yan-Hua Qian2, Shan-Hui Chen2, Guo-Lin Wang1, Meng-Na Wu1, Yong Huang1, Guang-Yuan Ma2, Li-Qun Fang1, Gregory C Gray3, Bing Lu2, Yi-Gang Tong1, Mai-Juan Ma1, Wu-Chun Cao1.
Abstract
In 2014, a sentinel chicken surveillance for avian influenza viruses was conducted in aquatic bird habitat near Wuxi City, Jiangsu Province, China. Two H7N2, one H5N6, and two H9N2 viruses were isolated. Sequence analysis revealed that the H7N2 virus is a novel reassortant of H7N9 and H9N2 viruses and H5N6 virus is a reassortant of H5N1 clade 2.3.4 and H6N6 viruses. Substitutions V186 and L226 (H3 numbering) in the hemagglutinin (HA) gene protein was found in two H7N2 viruses but not in the H5N6 virus. Two A138 and A160 mutations were identified in the HA gene protein of all three viruses but a P128 mutation was only observed in the H5N6 virus. A deletion of 3 and 11 amino acids in the neuraminidase stalk region was found in two H7N2 and H5N6 viruses, respectively. Moreover, a mutation of N31 in M2 protein was observed in both two H7N2 viruses. High similarity of these isolated viruses to viruses previously identified among poultry and humans, suggests that peridomestic aquatic birds may play a role in sustaining novel virus transmission. Therefore, continued surveillance is needed to monitor these avian influenza viruses in wild bird and domestic poultry that may pose a threat to poultry and human health.Entities:
Keywords: H5N6 virus; H7N2 virus; H9N2 virus; avian influenza A virus; sentinel chicken; transmission
Year: 2016 PMID: 27899915 PMCID: PMC5110548 DOI: 10.3389/fmicb.2016.01766
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 5.640
Figure 1Sentinel surveillance study site, Wuxi City, Jiangsu Province of China. (A) Location of surveillance study site and distribution of human infections with influenza A (H7N9) virus; (B) Satellite map of study site, red arrows indicate study site.
Influenza A viruses with greatest nucleotide sequence identity to avian influenza A (H7N2) viruses and sequence comparison of isolated in present study from Wuxi, China, 2014.
| HA | A/Anhui/1-BALF_RG8/2013(H7N9) | 99.6 | – | – | 100.0 |
| NA | A/chicken/Jiangsu/WX0204/2013(H9N2) | 99.5 | 99.9 | 99.9 | 99.9 |
| PB2 | A/chicken/Beijing/16/2013(H9N2) | 99.3 | 99.6 | 99.6 | 99.8 |
| A/chicken/Rizhao/55/2013(H9N2) | |||||
| PB1 | A/chicken/Shandong/qd0917/2013(H9N2) | 99.4 | 99.8 | 99.8 | 99.5 |
| PA | A/chicken/Shandong/qd0917/2013(H9N2) | 99.7 | 100.0 | 100.0 | 100.0 |
| NP | A/chicken/Qingdao/2144/2013(H9N2) | 99.5 | 99.9 | 99.9 | 100.0 |
| M | A/chicken/Beijing/0331/2013(H9N2) | 99.7 | 99.9 | 99.9 | 99.9 |
| NS | A/chicken/Shandong/qd0917/2013(H9N2) | 98.4 | 99.0 | 99.0 | 100.0 |
| HA | A/Anhui/1-BALF_RG8/2013(H7N9) | 99.6 | – | – | – |
| NA | A/chicken/Jiangsu/WX0204/2013(H9N2) | 99.6 | 100.0 | 100.0 | – |
| PB2 | A/chicken/Beijing/16/2013(H9N2) | 99.3 | 99.6 | 99.6 | – |
| A/chicken/Rizhao/55/2013(H9N2) | |||||
| PB1 | A/chicken/Shandong/qd0917/2013(H9N2) | 98.9 | 99.2 | 99.2 | – |
| PA | A/chicken/Shandong/qd0917/2013(H9N2) | 99.7 | 100.0 | 100.0 | – |
| NP | A/chicken/Qingdao/2144/2013(H9N2) | 99.5 | 99.9 | 99.9 | – |
| M | A/chicken/Beijing/0331/2013(H9N2) | 99.8 | 100.0 | 100.0 | – |
| NS | A/chicken/Shandong/qd0917/2013(H9N2) | 98.4 | 99.0 | 99.0 | – |
1, identity determined by a BLAST search of the Influenza Sequence Database; 2, identity compared with A/chicken/Wuxi/SC6395/2014(H9N2); 3, identity compared with A/chicken/Wuxi/SC4315/2014(H9N2); 4, identity compared each other.
HA, hemagglutinin; NA, neuraminidase; PB, polymerase basic; PA, polymerase basic; NP, nucleoprotein; M, matrix; NS, nonstructural.
Figure 2Phylogenetic tree of hemagglutinin (HA) and neuraminidase (NA) genes of influenza A (H7N2) viruses isolated from sentinel chickens, Wuxi City, Jiangsu Province of China, 2014. Supporting bootstrap values >75 are shown. The black circle dot indicates the viruses isolated in present study.
Figure 3Phylogenetic tree of hemagglutinin (HA) and neuraminidase (NA) genes of influenza A (H5N6) viruses isolated from sentinel chickens, Wuxi City, Jiangsu Province of China, 2014. Supporting bootstrap values >75 are shown. The black circle dot indicates the viruses isolated in present study.
Influenza A viruses isolated in present study and mutation analysis of critical amino acid residues associated with virulence, adaptation to mammals or antiviral resistance, Wuxi, China, 2014.
| Status of chickens | Healthy | Healthy | Sick | |
| Collection date | May 7, 2014 | June 19, 2014 | August 20, 2014 | |
| Cleavage | PEIPKGR↓G | PEIPKGR↓G | RERRRKR↓G | |
| S128P | S | S | Mammalian adaptation | |
| A135T | A | A | V | |
| S138A | ||||
| N158D | N | N | N | |
| T160A | ||||
| G186V | N | |||
| Q226L | Q | |||
| G228S | G | G | G | |
| Deletion | 63-65 (N2 numbering) | 63-65 (N2 numbering) | 58-68 (N6 numbering) | Enhance virus adaptation to domestic fowl |
| E119V | E | E | E | Oseltamivir resistance |
| D198N | D | D | ||
| I222V | I | |||
| H274Y | H | H | H | |
| R292K | R | R | R | |
| N294S | N | N | N | |
| Q136K | Q | Q | Q | Zanamivir resistance |
| D151E | D | D | D | |
| R224K | R | R | R | |
| R249K | ||||
| E276D | E | E | E | |
| S315N | S | S | K | |
| R371K | R | R | R | |
| E158G | E | E | E | Increased the morbidity and mortality of H5 viruses in mice |
| T271A | T | T | T | Enhance polymerase activity in human cells |
| L89V | V | V | V | Mammalian host adaption and increased virulence in mice |
| E627K | E | E | E | |
| D701N | D | D | D | |
| H99Y | H | H | H | H5 virus transmissible among ferrets |
| I368V | I | |||
| S12Stop | S | S | S | Enhanced transmission and pathogenicity to human for pH1N1 |
| N66S | N | N | n/a | Increased the virulence of an H5N1 virus |
| 58–90 truncated | No | No | Yes | Increased virulence in mammals |
| T97I | T | T | T | Increased pathogenicity in mice of H5N2 virus |
| T85I | T | T | T | Involved host adaptation of pH1N1 |
| G186S | G | G | G | |
| L336M | L | L | L | |
| P400L | P | P | P | Enhanced polymerase activity in human cells |
| M423I | V | V | ||
| V476A | ||||
| T552S | T | T | T | |
| A184K | Increased replication in mammalian cells pathogenicity | |||
| N319K | N | N | N | |
| N30D | D | D | D | Increased pathogenicity in mice of H5N1 |
| T215A | A | A | A | |
| S31N | S | Antiviral resistance (amantadine) | ||
| P42S | S | S | S | Increased virulence in mice or in pigs |
| D92E | D | D | ||
HA, hemagglutinin; NA, neuraminidase; PB, polymerase basic; PA, polymerase basic; NP, nucleoprotein; M, matrix; NS, nonstructural. Bold represents substation.
Figure 4Monitors captured partial image of birds during the surveillance period. Red arrows indicate observed birds in study site.