Literature DB >> 27899626

A prior-based integrative framework for functional transcriptional regulatory network inference.

Alireza F Siahpirani1, Sushmita Roy2,3.   

Abstract

Year:  2017        PMID： 27899626      PMCID： PMC5389683          DOI： 10.1093/nar/gkw1160

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


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  9 in total

1.  Gene regulatory network reconstruction using single-cell RNA sequencing of barcoded genotypes in diverse environments.

Authors:  Christopher A Jackson; Dayanne M Castro; Richard Bonneau; David Gresham; Giuseppe-Antonio Saldi
Journal:  Elife       Date:  2020-01-27       Impact factor: 8.140

2.  Dual threshold optimization and network inference reveal convergent evidence from TF binding locations and TF perturbation responses.

Authors:  Yiming Kang; Nikhil R Patel; Christian Shively; Pamela Samantha Recio; Xuhua Chen; Bernd J Wranik; Griffin Kim; R Scott McIsaac; Robi Mitra; Michael R Brent
Journal:  Genome Res       Date:  2020-02-14       Impact factor: 9.043

3.  Elucidation of the miR164c-Guided Gene/Protein Interaction Network Controlling Seed Vigor in Rice.

Authors:  Kerui Huang; Shiqi Zhou; Kaimin Shen; Yan Zhou; Feng Wang; Xiaocheng Jiang
Journal:  Front Plant Sci       Date:  2020-11-12       Impact factor: 5.753

4.  Evolution of regulatory networks associated with traits under selection in cichlids.

Authors:  Tarang K Mehta; Christopher Koch; Will Nash; Sara A Knaack; Padhmanand Sudhakar; Marton Olbei; Sarah Bastkowski; Luca Penso-Dolfin; Tamas Korcsmaros; Wilfried Haerty; Sushmita Roy; Federica Di-Palma
Journal:  Genome Biol       Date:  2021-01-08       Impact factor: 13.583

5.  A comprehensive transcription factor and DNA-binding motif resource for the construction of gene regulatory networks in Botrytis cinerea and Trichoderma atroviride.

Authors:  Consuelo Olivares-Yañez; Evelyn Sánchez; Gabriel Pérez-Lara; Aldo Seguel; Pamela Y Camejo; Luis F Larrondo; Elena A Vidal; Paulo Canessa
Journal:  Comput Struct Biotechnol J       Date:  2021-11-18       Impact factor: 7.271

6.  Multi-omics protein-coding units as massively parallel Bayesian networks: Empirical validation of causality structure.

Authors:  Alberto Zenere; Olof Rundquist; Mika Gustafsson; Claudio Altafini
Journal:  iScience       Date:  2022-03-11

7.  Condition-Specific Modeling of Biophysical Parameters Advances Inference of Regulatory Networks.

Authors:  Konstantine Tchourine; Christine Vogel; Richard Bonneau
Journal:  Cell Rep       Date:  2018-04-10       Impact factor: 9.423

8.  Reprogramming of regulatory network using expression uncovers sex-specific gene regulation in Drosophila.

Authors:  Yijie Wang; Dong-Yeon Cho; Hangnoh Lee; Justin Fear; Brian Oliver; Teresa M Przytycka
Journal:  Nat Commun       Date:  2018-10-03       Impact factor: 14.919

9.  The single-cell eQTLGen consortium.

Authors:  Mgp van der Wijst; D H de Vries; H E Groot; G Trynka; C C Hon; M J Bonder; O Stegle; M C Nawijn; Y Idaghdour; P van der Harst; C J Ye; J Powell; F J Theis; A Mahfouz; M Heinig; L Franke
Journal:  Elife       Date:  2020-03-09       Impact factor: 8.140
  9 in total

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