| Literature DB >> 27899146 |
Yoshinari Obata1, Norikazu Maeda2,3, Yuya Yamada4, Koji Yamamoto4, Seiji Nakamura5, Masaya Yamaoka1, Yoshimitsu Tanaka1, Shigeki Masuda1, Hirofumi Nagao1, Shiro Fukuda1, Yuya Fujishima1, Shunbun Kita1,6, Hitoshi Nishizawa1, Tohru Funahashi1,6, Ken-Ichi Matsubara5, Yuji Matsuzawa4, Iichiro Shimomura1.
Abstract
BACKGROUND: Visceral fat plays a central role in the development of metabolic syndrome and atherosclerotic cardiovascular diseases. The association of visceral fat accumulation with cardio-metabolic diseases has been reported, but the impact of visceral fat on the gene expression profile in peripheral blood cells remains to be determined. The aim of this study was to determine the effects of visceral fat area (VFA) and subcutaneous fat area (SFA) on the gene expression profile in peripheral blood cells of obese subjects.Entities:
Keywords: Adiponectin; Diabetes; Fat distribution; Gene expression; KLF; Metabolic syndrome; Microarray; Obesity; Subcutaneous fat; Visceral fat
Mesh:
Substances:
Year: 2016 PMID: 27899146 PMCID: PMC5129204 DOI: 10.1186/s12933-016-0479-1
Source DB: PubMed Journal: Cardiovasc Diabetol ISSN: 1475-2840 Impact factor: 9.951
Characteristics of subjects
| N | 17 |
| Sex (male/female) | 14/3 |
| Age (years) | 54.6 ± 14.6 |
| BMI (kg/m2) | 30 ± 5.5 |
| Waist circumference (cm) | 101 ± 11 |
| Visceral fat area (cm2) | 177 ± 67 |
| Subcutaneous fat area (cm2) | 245 ± 131 |
| Adiponectin (μg/mL) | 4.2 ± 1.7 |
| Systolic blood pressure (mm Hg) | 132 ± 17 |
| Diastolic blood pressure (mm Hg) | 82 ± 13.7 |
| Fast plasma glucose (mg/dL) | 102 ± 21 |
| Hemoglobin A1c (%) | 6.3 ± 1.3 |
| Diagnosis (T2DM/B/N) | 5/6/6 |
| HOMA-IR | 3.2 ± 2.3 |
| Total cholesterol (mg/dL) | 206 ± 40 |
| Triglyceride (mg/dL) | 196 ± 129 |
| HDL-C (mg/dL) | 56.3 ± 18.1 |
| LDL-C (mg/dL) | 114 ± 40 |
| Uric acid (mg/dL) | 6.4 ± 0.8 |
| Urinary albumin (μg/day) | 12.3 ± 10.6 |
| eGFR (mL/min/1.73 m2) | 77.9 ± 19.8 |
| mean IMT ≥1.1 mm | 7/10 |
| Statin use (±) | 7/10 |
| ACE-I/ARB use (±) | 4/13 |
Data are mean ± SD
T2DM type 2 diabetes mellitus, B borderline diabetes, N normal glucose tolerance, HOMA-IR homeostasis model assessment of insulin resistance, HDL-C high density lipoprotein-cholesterol, LDL-C low density lipoprotein-cholesterol, eGFR estimated glomerular filtration rate, IMT intima-media thickness, ACE-I angiotensin converting enzyme inhibitor, ARB angiotensin II receptor blocker
Changes in probes according to various clinical parameters
| FDR < 0.1 | Up | Down | |
|---|---|---|---|
|
| |||
| Sex | 52 | 20 | 32 |
| Diagnosis of diabetes | 0 | 0 | 0 |
| Mean IMT | 0 | 0 | 0 |
| Statin use | 0 | 0 | 0 |
| ACE-I/ARB use | 0 | 0 | 0 |
|
| |||
| Age | 625 | 206 | 419 |
| Body mass index | 0 | 0 | 0 |
| Visceral fat area | 1354 | 307 | 1047 |
| Subcutaneous fat area | 0 | 0 | 0 |
| Adiponectin | 0 | 0 | 0 |
| Hemoglobin A1c | 0 | 0 | 0 |
| HOMA-IR | 0 | 0 | 0 |
Data represent number of probes
FDR false discovery rate, IMT intima-media thickness, ACE-I angiotensin converting enzyme inhibitor, ARB angiotensin II receptor blocker, HOMA-IR homeostasis model assessment of insulin resistance
Fig. 1Changes in the number of genes according to various clinical parameters. The target 23,197 probes were selected under the condition that significant signals were detected in more than 7 cases among 17 subjects. Data represent the number of probes that showed significant upregulation and downregulation according to the listed clinical parameters under the statistical environment that the parametric false discovery rate (FDR) was less than 0.1. Parameters such as sex, diagnosis for diabetes, mean IMT, statin use, and ACE-I/ARB use were adopted as categorical variables. Age, BMI, visceral and subcutaneous fat areas, adiponectin, hemoglobin A1c, and HOMA-IR were adopted as continuous variables. BMI body mass index; HOMA-IR homeostasis model assessment of insulin resistance; IMT intima-media thickness; ACE-I angiotensin converting enzyme inhibitor; ARB angiotensin II receptor blocker
Top 30 genes that correlated positively and negatively with visceral fat area
| Probe name | Gene symbol | Gene name | R |
| FDR |
|---|---|---|---|---|---|
|
| |||||
| A_21_P0013668 | SPATA31C2 | SPATA31 subfamily C, member 2 | 0.830 | 3.72E−05 | 0.08430563 |
| A_19_P00803850 | LOC100505474 | Uncharacterized LOC100505474 | 0.828 | 4.01E−05 | 0.08430563 |
| A_33_P3238410 | SBF1 | SET binding factor 1 | 0.814 | 6.93E−05 | 0.08430563 |
| A_23_P325676 | ZNF653 | Zinc finger protein 653 | 0.803 | 1.03E−04 | 0.08430563 |
| A_23_P384532 | CCDC11 | Coiled-coil domain containing 11 | 0.802 | 1.07E−04 | 0.08430563 |
| A_33_P3311956 | FEZ2 | Fasciculation and elongation protein zeta 2 (zygin II) | 0.801 | 1.13E−04 | 0.08430563 |
| A_23_P430670 | CHST5 | Carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5 | 0.797 | 1.29E−04 | 0.08430563 |
| A_33_P3253653 | GPR155 | G protein-coupled receptor 155 | 0.779 | 2.29E−04 | 0.08430563 |
| A_33_P3314974 | PARD6G-AS1 | PARD6G antisense RNA 1 | 0.778 | 2.33E−04 | 0.08430563 |
| A_33_P3402773 | 0.775 | 2.61E−04 | 0.084956675 | ||
| A_24_P117942 | TOMM20L | Translocase of outer mitochondrial membrane 20 homolog (yeast)-like | 0.771 | 2.94E−04 | 0.084956675 |
| A_33_P3772937 | KRT8P12 | Keratin 8 pseudogene 12 | 0.768 | 3.15E−04 | 0.084956675 |
| A_33_P3404889 | 0.768 | 3.20E−04 | 0.084956675 | ||
| A_33_P3379436 | FAM74A4 | Family with sequence similarity 74, member A4 | 0.767 | 3.29E−04 | 0.084956675 |
| A_23_P34066 | IL9R | Interleukin 9 receptor | 0.765 | 3.50E−04 | 0.084956675 |
| A_23_P417415 | ACOT11 | Acyl-CoA thioesterase 11 | 0.758 | 4.19E−04 | 0.084956675 |
| A_33_P3410093 | LTA4H | Leukotriene A4 hydrolase | 0.758 | 4.22E−04 | 0.084956675 |
| A_33_P3334895 | GRIN2A | Glutamate receptor, ionotropic, N-methyl D-aspartate 2A | 0.750 | 5.26E−04 | 0.084956675 |
| A_23_P72697 | GPIHBP1 | Glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1 | 0.749 | 5.40E−04 | 0.084956675 |
| A_33_P3378531 | AS3MT | Arsenite methyltransferase | 0.748 | 5.57E−04 | 0.084956675 |
| A_24_P75190 | HBD | Hemoglobin, delta | 0.747 | 5.76E−04 | 0.084956675 |
| A_23_P26457 | HBA2 | Hemoglobin, alpha 2 | 0.744 | 6.08E−04 | 0.084956675 |
| A_33_P3265866 | 0.744 | 6.09E−04 | 0.084956675 | ||
| A_21_P0004859 | BTN2A1 | Butyrophilin, subfamily 2, member A1 | 0.741 | 6.63E−04 | 0.084956675 |
| A_21_P0005185 | DKFZp686L13185 | Uncharacterized LOC401287 | 0.739 | 6.95E−04 | 0.084956675 |
| A_21_P0012204 | XLOC_014512 | 0.739 | 7.00E−04 | 0.084956675 | |
| A_21_P0009476 | XLOC_012670 | 0.737 | 7.45E−04 | 0.084956675 | |
| A_33_P3365932 | WASH1 | WAS protein family homolog 1 | 0.734 | 7.91E−04 | 0.084956675 |
| A_19_P00812257 | LINC01191 | Long intergenic non-protein coding RNA 1191 | 0.732 | 8.26E−04 | 0.084956675 |
| A_23_P209564 | CYBRD1 | Cytochrome b reductase 1 | 0.732 | 8.36E−04 | 0.084956675 |
|
| |||||
| A_23_P168828 | KLF10 | KRUPPEL-like factor 10 | −0.856 | 1.16E−05 | 0.08430563 |
| A_32_P54544 | CCT6A | Chaperonin containing TCP1, subunit 6A (zeta 1) | −0.832 | 3.40E−05 | 0.08430563 |
| A_23_P389919 | WHSC1 | Wolf-Hirschhorn syndrome candidate 1 | −0.830 | 3.74E−05 | 0.08430563 |
| A_23_P44139 | PRIM2 | Primase, DNA, polypeptide 2 (58 kDa) | −0.827 | 4.21E−05 | 0.08430563 |
| A_19_P00331853 | LOC100131564 | uncharacterized LOC100131564 | −0.826 | 4.34E−05 | 0.08430563 |
| A_23_P501877 | ZFP64 | ZFP64 zinc finger protein | −0.826 | 4.36E−05 | 0.08430563 |
| A_24_P3973 | HNRNPA2B1 | Heterogeneous nuclear ribonucleoprotein A2/B1 | −0.826 | 4.46E−05 | 0.08430563 |
| A_23_P215088 | ZC3HC1 | Zinc finger, C3HC-type containing 1 | −0.826 | 4.47E−05 | 0.08430563 |
| A_23_P7679 | NUP155 | Nucleoporin 155 kDa | −0.816 | 6.50E−05 | 0.08430563 |
| A_33_P3381483 | ZNF331 | Zinc finger protein 331 | −0.811 | 7.73E−05 | 0.08430563 |
| A_23_P115149 | WDR77 | WD repeat domain 77 | −0.808 | 8.71E−05 | 0.08430563 |
| A_23_P151093 | YARS2 | Tyrosyl-tRNA synthetase 2, mitochondrial | −0.807 | 8.92E−05 | 0.08430563 |
| A_23_P251421 | CDCA7 | Cell division cycle associated 7 | −0.807 | 8.94E−05 | 0.08430563 |
| A_21_P0008290 | LINC00641 | Long intergenic non-protein coding RNA 641 | −0.807 | 9.17E−05 | 0.08430563 |
| A_33_P3262665 | MAP7D3 | MAP7 domain containing 3 | −0.805 | 9.59E−05 | 0.08430563 |
| A_33_P3213557 | CCZ1 | CCZ1 vacuolar protein trafficking and biogenesis associated homolog ( | −0.805 | 9.60E−05 | 0.08430563 |
| A_23_P202143 | NOLC1 | Nucleolar and coiled-body phosphoprotein 1 | −0.804 | 1.01E−04 | 0.08430563 |
| A_23_P46924 | BUB3 | BUB3 mitotic checkpoint protein | −0.803 | 1.04E−04 | 0.08430563 |
| A_24_P925635 | SEPT7P2 | Septin 7 pseudogene 2 | −0.803 | 1.06E−04 | 0.08430563 |
| A_24_P345822 | TFG | TRK-fused gene | −0.802 | 1.08E−04 | 0.08430563 |
| A_23_P85180 | TMEM187 | Transmembrane protein 187 | −0.801 | 1.10E−04 | 0.08430563 |
| A_33_P3221234 | IPP | Intracisternal A particle-promoted polypeptide | −0.801 | 1.13E−04 | 0.08430563 |
| A_33_P3415037 | VDAC2 | Voltage-dependent anion channel 2 | −0.799 | 1.20E−04 | 0.08430563 |
| A_33_P3309929 | HDAC3 | Histone deacetylase 3 | −0.799 | 1.21E−04 | 0.08430563 |
| A_23_P214798 | SYNCRIP | Synaptotagmin binding, cytoplasmic RNA interacting protein | −0.796 | 1.34E−04 | 0.08430563 |
| A_21_P0012709 | XLOC_014512 | −0.795 | 1.38E−04 | 0.08430563 | |
| A_24_P116909 | MALT1 | Mucosa associated lymphoid tissue lymphoma translocation gene 1 | −0.794 | 1.42E−04 | 0.08430563 |
| A_23_P69437 | YEATS2 | YEATS domain containing 2 | −0.793 | 1.45E−04 | 0.08430563 |
| A_33_P3251538 | MAPKAP1 | Mitogen-activated protein kinase associated protein 1 | −0.793 | 1.46E−04 | 0.08430563 |
| A_23_P102202 | MSH6 | Muts homolog 6 | −0.793 | 1.47E−04 | 0.08430563 |
Significant GO terms based on genes that correlated positively and negatively with visceral fat area
| GO | GO term | Corrected |
|---|---|---|
|
| ||
| Biological process | Oxygen transport | 8.821E−04 |
| Gas transport | 3.707E−03 | |
| Molecular function | Oxygen transporter activity | 5.310E−04 |
| Cellular component | Hemoglobin complex | 3.428E−04 |
|
| ||
| Biological process | RNA processing | 6.559E−21 |
| Heterocycle metabolic process | 1.252E−20 | |
| Cellular nitrogen compound metabolic process | 8.348E−20 | |
| Nucleobase-containing compound metabolic process | 1.702E−19 | |
| Organic cyclic compound metabolic process | 2.892E−19 | |
| Cellular aromatic compound metabolic process | 6.642E−19 | |
| Cellular metabolic process | 4.940E−18 | |
| Nitrogen compound metabolic process | 9.293E−18 | |
| Nucleic acid metabolic process | 1.052E−16 | |
| Cellular macromolecule metabolic process | 1.780E−16 | |
| Metabolic process | 1.122E−14 | |
| Primary metabolic process | 1.551E−14 | |
| Gene expression | 3.068E−14 | |
| Organic substance metabolic process | 7.768E−14 | |
| Macromolecule metabolic process | 1.529E−11 | |
| RNA metabolic process | 3.440E−11 | |
| mRNA processing | 5.194E−11 | |
| ncRNA metabolic process | 1.859E−10 | |
| RNA splicing | 5.494E−10 | |
| Molecular function | RNA binding | 1.470E−10 |
| Nucleotide binding | 2.106E−07 | |
| Nucleoside phosphate binding | 2.143E−07 | |
| Heterocyclic compound binding | 1.144E−06 | |
| Nucleic acid binding | 2.081E−06 | |
| Aminoacyl-tRNA ligase activity | 2.924E−06 | |
| Ligase activity, forming aminoacyl-tRNA and related compounds | 2.924E−06 | |
| Ligase activity, forming carbon–oxygen bonds | 2.924E−06 | |
| Organic cyclic compound binding | 3.035E−06 | |
| Small molecule binding | 3.265E−06 | |
| Catalytic activity | 1.736E−04 | |
| ATP-dependent helicase activity | 3.046E−04 | |
| Purine NTP-dependent helicase activity | 3.046E−04 | |
| Structure-specific DNA binding | 3.201E−04 | |
| ATPase activity | 9.197E−04 | |
| ATPase activity, coupled | 1.738E−03 | |
| Adenyl nucleotide binding | 1.738E−03 | |
| ATP binding | 1.799E−03 | |
| Adenyl ribonucleotide binding | 2.557E−03 | |
| Cellular component | Nuclear part | 2.984E−28 |
| Intracellular part | 6.115E−28 | |
| Intracellular | 1.984E−27 | |
| Intracellular membrane-bounded organelle | 8.017E−27 | |
| Membrane-enclosed lumen | 6.105E−24 | |
| Intracellular organelle lumen | 6.201E−24 | |
| Nuclear lumen | 6.172E−23 | |
| Organelle lumen | 8.194E−23 | |
| Intracellular organelle part | 2.042E−22 | |
| Intracellular organelle | 2.087E−22 | |
| Membrane-bounded organelle | 1.535E−21 | |
| Organelle part | 3.743E−21 | |
| Nucleus | 1.105E−20 | |
| Organelle | 1.383E−17 | |
| Nucleolus | 2.194E−16 | |
| Nucleoplasm | 4.535E−15 | |
| Mitochondrion | 1.779E−13 | |
| Mitochondrial part | 1.863E−09 | |
| Cytoplasm | 2.197E−09 | |
Fig. 2Percentages of obesity-related genes that correlated significantly with visceral and subcutaneous fat area. Gene ontology analysis was performed to examine the impact of visceral fat area (VFA) and subcutaneous fat area (SFA) on the percentage of obesity-associated genes (relative to total number of genes), such as inflammation (GO:0006954), oxidative stress (GO:0006979), immune response (GO:0006955), lipid metabolism (GO:0006629), and glucose metabolism (GO:0006006)