Literature DB >> 27897350

Cooperativity in the Self-Assembly of the Guanine Nucleobase into Quartet and Ribbon Structures on Surfaces.

Gábor Paragi1,2, Célia Fonseca Guerra1.   

Abstract

The guanine nucleobase can self-assemble into tetrameric or ribbon structures on surfaces or in solution. The origin for the occurrence of different aggregation patterns has not yet been investigated. Herein, a quantum chemical study on the different self-assembled structures of guanine and xanthine by using dispersion-corrected DFT is presented. Theoretical investigations can be used to explain, from an electronic point of view, the differences between the experimental findings. With quantitative Kohn-Sham molecular orbital theory and the accompanying energy decomposition analysis, the hydrogen-bonding mechanism within the guanine ribbons can be disclosed and the preferred self-assembled structures under different experimental conditions can be explained. An important role of the σ-electronic system in the guanine self-assembled structures is revealed as the main factor for the switch between different arrangements on surfaces and in crystals.
© 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  G-quadruplexes; cooperative effects; hydrogen bonds; nanostructures; self-assembly

Mesh:

Substances:

Year:  2017        PMID: 27897350     DOI: 10.1002/chem.201604830

Source DB:  PubMed          Journal:  Chemistry        ISSN: 0947-6539            Impact factor:   5.236


  6 in total

1.  Metal ions confinement defines the architecture of G-quartet, G-quadruplex fibrils and their assembly into nematic tactoids.

Authors:  Xiaoyang Li; Antoni Sánchez-Ferrer; Massimo Bagnani; Jozef Adamcik; Paride Azzari; Jingcheng Hao; Aixin Song; Hongguo Liu; Raffaele Mezzenga
Journal:  Proc Natl Acad Sci U S A       Date:  2020-04-21       Impact factor: 11.205

2.  Designing Self-Assembled Rosettes: Why Ammeline is a Superior Building Block to Melamine.

Authors:  Andre Nicolai Petelski; Célia Fonseca Guerra
Journal:  ChemistryOpen       Date:  2018-11-20       Impact factor: 2.911

Review 3.  The Nature of Hydrogen Bonds: A Delineation of the Role of Different Energy Components on Hydrogen Bond Strengths and Lengths.

Authors:  Stephanie C C van der Lubbe; Célia Fonseca Guerra
Journal:  Chem Asian J       Date:  2019-07-19

4.  Mixed guanine, adenine base quartets: possible roles of protons and metal ions in their stabilization.

Authors:  Dominik A Megger; Patrick M Lax; Jeroen Paauwe; Célia Fonseca Guerra; Bernhard Lippert
Journal:  J Biol Inorg Chem       Date:  2017-12-07       Impact factor: 3.358

5.  Halogen-Bonded Guanine Base Pairs, Quartets and Ribbons.

Authors:  Nicholas J Thornton; Tanja van Mourik
Journal:  Int J Mol Sci       Date:  2020-09-08       Impact factor: 5.923

Review 6.  Analytical and Structural Studies for the Investigation of Oxidative Stress in Guanine Oligonucleotides.

Authors:  Györgyi Ferenc; Zoltán Váradi; Zoltán Kupihár; Gábor Paragi; Lajos Kovács
Journal:  Int J Mol Sci       Date:  2020-07-15       Impact factor: 5.923

  6 in total

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