Literature DB >> 27896965

IDENTIFICATION OF DISCRIMINATIVE IMAGING PROTEOMICS ASSOCIATIONS IN ALZHEIMER'S DISEASE VIA A NOVEL SPARSE CORRELATION MODEL.

Jingwen Yan1, Shannon L Risacher, Kwangsik Nho, Andrew J Saykin, L I Shen.   

Abstract

Brain imaging and protein expression, from both cerebrospinal fluid and blood plasma, have been found to provide complementary information in predicting the clinical outcomes of Alzheimer's disease (AD). But the underlying associations that contribute to such a complementary relationship have not been previously studied yet. In this work, we will perform an imaging proteomics association analysis to explore how they are related with each other. While traditional association models, such as Sparse Canonical Correlation Analysis (SCCA), can not guarantee the selection of only disease-relevant biomarkers and associations, we propose a novel discriminative SCCA (denoted as DSCCA) model with new penalty terms to account for the disease status information. Given brain imaging, proteomic and diagnostic data, the proposed model can perform a joint association and multi-class discrimination analysis, such that we can not only identify disease-relevant multimodal biomarkers, but also reveal strong associations between them. Based on a real imaging proteomic data set, the empirical results show that DSCCA and traditional SCCA have comparable association performances. But in a further classification analysis, canonical variables of imaging and proteomic data obtained in DSCCA demonstrate much more discrimination power toward multiple pairs of diagnosis groups than those obtained in SCCA.

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Mesh:

Year:  2017        PMID: 27896965      PMCID: PMC5147740          DOI: 10.1142/9789813207813_0010

Source DB:  PubMed          Journal:  Pac Symp Biocomput        ISSN: 2335-6928


  16 in total

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Journal:  Neurobiol Aging       Date:  2002 Mar-Apr       Impact factor: 4.673

3.  IMAGING GENETICS VIA SPARSE CANONICAL CORRELATION ANALYSIS.

Authors:  Eric C Chi; Genevera I Allen; Hua Zhou; Omid Kohannim; Kenneth Lange; Paul M Thompson
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2013-12-31

4.  Identifying Neuroimaging and Proteomic Biomarkers for MCI and AD via the Elastic Net.

Authors:  Li Shen; Sungeun Kim; Yuan Qi; Mark Inlow; Shanker Swaminathan; Kwangsik Nho; Jing Wan; Shannon L Risacher; Leslie M Shaw; John Q Trojanowski; Michael W Weiner; Andrew J Saykin
Journal:  Multimodal Brain Image Anal (2011)       Date:  2011-09

5.  Predictive markers for AD in a multi-modality framework: an analysis of MCI progression in the ADNI population.

Authors:  Chris Hinrichs; Vikas Singh; Guofan Xu; Sterling C Johnson
Journal:  Neuroimage       Date:  2010-12-10       Impact factor: 6.556

6.  Hippocampal surface mapping of genetic risk factors in AD via sparse learning models.

Authors:  Jing Wan; Sungeun Kim; Mark Inlow; Kwangsik Nho; Shanker Swaminathan; Shannon L Risacher; Shiaofen Fang; Michael W Weiner; M Faisal Beg; Lei Wang; Andrew J Saykin; Li Shen
Journal:  Med Image Comput Comput Assist Interv       Date:  2011

7.  VEGF genetic variability is associated with increased risk of developing Alzheimer's disease.

Authors:  Roberto Del Bo; Serena Ghezzi; Elio Scarpini; Nereo Bresolin; Giacomo Pietro Comi
Journal:  J Neurol Sci       Date:  2009-03-09       Impact factor: 3.181

8.  Genome-wide association study of CSF levels of 59 alzheimer's disease candidate proteins: significant associations with proteins involved in amyloid processing and inflammation.

Authors:  John S K Kauwe; Matthew H Bailey; Perry G Ridge; Rachel Perry; Mark E Wadsworth; Kaitlyn L Hoyt; Lyndsay A Staley; Celeste M Karch; Oscar Harari; Carlos Cruchaga; Benjamin J Ainscough; Kelly Bales; Eve H Pickering; Sarah Bertelsen; Anne M Fagan; David M Holtzman; John C Morris; Alison M Goate
Journal:  PLoS Genet       Date:  2014-10-23       Impact factor: 5.917

9.  Involvement of receptor tyrosine kinase Tyro3 in amyloidogenic APP processing and β-amyloid deposition in Alzheimer's disease models.

Authors:  Yan Zheng; Qi Wang; Bing Xiao; Qingjun Lu; Yizheng Wang; Xiaomin Wang
Journal:  PLoS One       Date:  2012-06-11       Impact factor: 3.240

10.  Correspondence between fMRI and SNP data by group sparse canonical correlation analysis.

Authors:  Dongdong Lin; Vince D Calhoun; Yu-Ping Wang
Journal:  Med Image Anal       Date:  2013-10-31       Impact factor: 8.545

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  6 in total

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Authors:  Wenbo Wang; Wei Kong; Shuaiqun Wang; Kai Wei
Journal:  J Mol Neurosci       Date:  2022-01-26       Impact factor: 3.444

2.  Brain Imaging Genomics: Integrated Analysis and Machine Learning.

Authors:  Li Shen; Paul M Thompson
Journal:  Proc IEEE Inst Electr Electron Eng       Date:  2019-10-29       Impact factor: 10.961

3.  Progress and Research Priorities in Imaging Genomics for Heart and Lung Disease: Summary of an NHLBI Workshop.

Authors:  Donna K Arnett; Ramachandran S Vasan; Matthew Nayor; Li Shen; Gary M Hunninghake; Peter Kochunov; R Graham Barr; David A Bluemke; Ulrich Broeckel; Peter Caravan; Susan Cheng; Paul S de Vries; Udo Hoffmann; Márton Kolossváry; Huiqing Li; James Luo; Elizabeth M McNally; George Thanassoulis
Journal:  Circ Cardiovasc Imaging       Date:  2021-08-13       Impact factor: 8.589

4.  A technical review of canonical correlation analysis for neuroscience applications.

Authors:  Xiaowei Zhuang; Zhengshi Yang; Dietmar Cordes
Journal:  Hum Brain Mapp       Date:  2020-06-27       Impact factor: 5.038

5.  Brain transcriptomic profiling reveals common alterations across neurodegenerative and psychiatric disorders.

Authors:  Iman Sadeghi; Juan D Gispert; Emilio Palumbo; Manuel Muñoz-Aguirre; Valentin Wucher; Valeria D'Argenio; Gabriel Santpere; Arcadi Navarro; Roderic Guigo; Natàlia Vilor-Tejedor
Journal:  Comput Struct Biotechnol J       Date:  2022-08-19       Impact factor: 6.155

6.  Identifying diagnosis-specific genotype-phenotype associations via joint multitask sparse canonical correlation analysis and classification.

Authors:  Lei Du; Fang Liu; Kefei Liu; Xiaohui Yao; Shannon L Risacher; Junwei Han; Lei Guo; Andrew J Saykin; Li Shen
Journal:  Bioinformatics       Date:  2020-07-01       Impact factor: 6.937

  6 in total

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