Literature DB >> 27896757

LC-MSE, Multiplex MS/MS, Ion Mobility, and Label-Free Quantitation in Clinical Proteomics.

Gustavo Henrique Martins Ferreira Souza1, Paul C Guest2, Daniel Martins-de-Souza2.   

Abstract

Proteomic tools can only be implemented in clinical settings if high-throughput, automated, sensitive, and accurate methods are developed. This has driven researchers to the edge of mass spectrometry (MS)-based proteomics capacity. Here we provide an overview of recent achievements in mass spectrometric technologies and instruments. This includes development of high and ultra definition-MSE (HDMSE and UDMSE) through implementation of ion mobility (IM) MS towards sensitive and accurate label-free proteomics using ultra performance liquid chromatography (UPLC). Label free UPLC-HDMSE is less expensive than labeled-based quantitative proteomics and has no limits regarding the number of samples that can be analyzed and compared, which is an important requirement for supporting clinical applications.

Keywords:  DIA; Data independent acquisition; HDMSE; Label-free; MSE; Proteomics; UDMSE

Mesh:

Substances:

Year:  2017        PMID: 27896757     DOI: 10.1007/978-1-4939-6730-8_4

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  11 in total

1.  Detailed Method for Performing the ExSTA Approach in Quantitative Bottom-Up Plasma Proteomics.

Authors:  Andrew J Percy; Christoph H Borchers
Journal:  Methods Mol Biol       Date:  2021

2.  Traumatic Brain Injury Temporal Proteome Guides KCC2-Targeted Therapy.

Authors:  Pavel N Lizhnyak; Pretal P Muldoon; Pallavi P Pilaka; John T Povlishock; Andrew K Ottens
Journal:  J Neurotrauma       Date:  2019-07-31       Impact factor: 5.269

3.  Human Blood Plasma Investigation Employing 2D UPLC-UDMSE Data-Independent Acquisition Proteomics.

Authors:  Licia C Silva-Costa; Bradley J Smith; Pamela T Carlson; Gustavo H M F Souza; Daniel Martins-de-Souza
Journal:  Methods Mol Biol       Date:  2021

4.  Immune Response Resetting in Ongoing Sepsis.

Authors:  Alexandre E Nowill; Márcia C Fornazin; Maria C Spago; Vicente Dorgan Neto; Vitória R P Pinheiro; Simônia S S Alexandre; Edgar O Moraes; Gustavo H M F Souza; Marcos N Eberlin; Lygia A Marques; Eduardo C Meurer; Gilberto C Franchi; Pedro O de Campos-Lima
Journal:  J Immunol       Date:  2019-07-29       Impact factor: 5.422

5.  Differential Expression of Proteins in an Atypical Presentation of Autoimmune Lymphoproliferative Syndrome.

Authors:  Dulce María Delgadillo; Adriana Ivonne Céspedes-Cruz; Emmanuel Ríos-Castro; María Guadalupe Rodríguez Maldonado; Mariel López-Nogueda; Miguel Márquez-Gutiérrez; Rocío Villalobos-Manzo; Lorena Ramírez-Reyes; Misael Domínguez-Fuentes; José Tapia-Ramírez
Journal:  Int J Mol Sci       Date:  2022-05-11       Impact factor: 6.208

6.  Comparative metabolomic responses to gibberellic acid and 6-benzylaminopurine in Cunila menthoides Benth. (Lamiaceae): a contribution to understand the metabolic pathways.

Authors:  Joana P S Oliveira; Maria Gabriela B Koblitz; Mariana S L Ferreira; L C Cameron; Andrea F Macedo
Journal:  Plant Cell Rep       Date:  2018-05-23       Impact factor: 4.570

7.  Differential Metabolism of a Two-Carbon Substrate by Members of the Paracoccidioides Genus.

Authors:  Lilian C Baeza; Fabiana R da Mata; Laurine L Pigosso; Maristela Pereira; Gustavo H M F de Souza; Alexandre S G Coelho; Célia M de Almeida Soares
Journal:  Front Microbiol       Date:  2017-11-27       Impact factor: 5.640

8.  Metabolic syndrome diminishes insulin-induced Akt activation and causes a redistribution of Akt-interacting proteins in cardiomyocytes.

Authors:  Huguet V Landa-Galvan; Emmanuel Rios-Castro; Tatiana Romero-Garcia; Angelica Rueda; Jesus Alberto Olivares-Reyes
Journal:  PLoS One       Date:  2020-01-29       Impact factor: 3.240

9.  Short term changes in the proteome of human cerebral organoids induced by 5-MeO-DMT.

Authors:  Vanja Dakic; Juliana Minardi Nascimento; Rafaela Costa Sartore; Renata de Moraes Maciel; Draulio B de Araujo; Sidarta Ribeiro; Daniel Martins-de-Souza; Stevens K Rehen
Journal:  Sci Rep       Date:  2017-10-09       Impact factor: 4.379

Review 10.  Gut-Brain Axis and Neurodegeneration: State-of-the-Art of Meta-Omics Sciences for Microbiota Characterization.

Authors:  Bruno Tilocca; Luisa Pieroni; Alessio Soggiu; Domenico Britti; Luigi Bonizzi; Paola Roncada; Viviana Greco
Journal:  Int J Mol Sci       Date:  2020-06-05       Impact factor: 5.923

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