Literature DB >> 27896013

Using electron microscopy to calculate optical properties of biological samples.

Wenli Wu1, Andrew J Radosevich2, Adam Eshein2, The-Quyen Nguyen2, Ji Yi3, Lusik Cherkezyan2, Hemant K Roy4, Igal Szleifer5, Vadim Backman5.   

Abstract

The microscopic structural origins of optical properties in biological media are still not fully understood. Better understanding these origins can serve to improve the utility of existing techniques and facilitate the discovery of other novel techniques. We propose a novel analysis technique using electron microscopy (EM) to calculate optical properties of specific biological structures. This method is demonstrated with images of human epithelial colon cell nuclei. The spectrum of anisotropy factor g, the phase function and the shape factor D of the nuclei are calculated. The results show strong agreement with an independent study. This method provides a new way to extract the true phase function of biological samples and provides an independent validation for optical property measurement techniques.

Entities:  

Keywords:  (000.1430) Biology and medicine; (160.4760) Optical properties; (170.3660) Light propagation in tissues; (170.4580) Optical diagnostics for medicine

Year:  2016        PMID: 27896013      PMCID: PMC5119613          DOI: 10.1364/BOE.7.004749

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  46 in total

1.  Double-integrating-sphere system for measuring the optical properties of tissue.

Authors:  J W Pickering; S A Prahl; N van Wieringen; J F Beek; H J Sterenborg; M J van Gemert
Journal:  Appl Opt       Date:  1993-02-01       Impact factor: 1.980

2.  Subdiffusion reflectance spectroscopy to measure tissue ultrastructure and microvasculature: model and inverse algorithm.

Authors:  Andrew J Radosevich; Adam Eshein; The-Quyen Nguyen; Vadim Backman
Journal:  J Biomed Opt       Date:  2015       Impact factor: 3.170

3.  Low-coherent backscattering spectroscopy for tissue characterization.

Authors:  Young L Kim; Yang Liu; Ramesh K Wali; Hemant K Roy; Vadim Backman
Journal:  Appl Opt       Date:  2005-01-20       Impact factor: 1.980

4.  Depth-resolved low-coherence enhanced backscattering.

Authors:  Young L Kim; Yang Liu; Vladimir M Turzhitsky; Ramesh K Wali; Hemant K Roy; Vadim Backman
Journal:  Opt Lett       Date:  2005-04-01       Impact factor: 3.776

5.  Mechanisms of light scattering from biological cells relevant to noninvasive optical-tissue diagnostics.

Authors:  J R Mourant; J P Freyer; A H Hielscher; A A Eick; D Shen; T M Johnson
Journal:  Appl Opt       Date:  1998-06-01       Impact factor: 1.980

6.  Accuracy of the Born approximation in calculating the scattering coefficient of biological continuous random media.

Authors:  Ilker R Capoğlu; Jeremy D Rogers; Allen Taflove; Vadim Backman
Journal:  Opt Lett       Date:  2009-09-01       Impact factor: 3.776

7.  Concentration evaluation of chromatin in unstained resin-embedded sections by means of low-dose ratio-contrast imaging in STEM.

Authors:  B Bohrmann; M Haider; E Kellenberger
Journal:  Ultramicroscopy       Date:  1993-02       Impact factor: 2.689

8.  Single realization stochastic FDTD for weak scattering waves in biological random media.

Authors:  Tengmeng Tan; Allen Taflove; Vadim Backman
Journal:  IEEE Trans Antennas Propag       Date:  2012-09-21       Impact factor: 4.388

9.  Determination of the distribution of light, optical properties, drug concentration, and tissue oxygenation in-vivo in human prostate during motexafin lutetium-mediated photodynamic therapy.

Authors:  Timothy C Zhu; Jarod C Finlay; Stephen M Hahn
Journal:  J Photochem Photobiol B       Date:  2004-12-02       Impact factor: 6.252

10.  Imaging the subcellular structure of human coronary atherosclerosis using micro-optical coherence tomography.

Authors:  Linbo Liu; Joseph A Gardecki; Seemantini K Nadkarni; Jimmy D Toussaint; Yukako Yagi; Brett E Bouma; Guillermo J Tearney
Journal:  Nat Med       Date:  2011-07-10       Impact factor: 53.440

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  6 in total

1.  Macrogenomic engineering via modulation of the scaling of chromatin packing density.

Authors:  Luay M Almassalha; Greta M Bauer; Wenli Wu; Lusik Cherkezyan; Di Zhang; Alexis Kendra; Scott Gladstein; John E Chandler; David VanDerway; Brandon-Luke L Seagle; Andrey Ugolkov; Daniel D Billadeau; Thomas V O'Halloran; Andrew P Mazar; Hemant K Roy; Igal Szleifer; Shohreh Shahabi; Vadim Backman
Journal:  Nat Biomed Eng       Date:  2017-11-06       Impact factor: 25.671

2.  Measuring Nanoscale Chromatin Heterogeneity with Partial Wave Spectroscopic Microscopy.

Authors:  Scott Gladstein; Andrew Stawarz; Luay M Almassalha; Lusik Cherkezyan; John E Chandler; Xiang Zhou; Hariharan Subramanian; Vadim Backman
Journal:  Methods Mol Biol       Date:  2018

3.  Origins of subdiffractional contrast in optical coherence tomography.

Authors:  Aya Eid; James A Winkelmann; Adam Eshein; Allen Taflove; Vadim Backman
Journal:  Biomed Opt Express       Date:  2021-05-26       Impact factor: 3.732

4.  Uridine as a protector against hypoxia-induced lung injury.

Authors:  Ekaterina V Rozova; Irina N Mankovskaya; Natalia V Belosludtseva; Natalya V Khmil; Galina D Mironova
Journal:  Sci Rep       Date:  2019-07-01       Impact factor: 4.379

5.  Disordered chromatin packing regulates phenotypic plasticity.

Authors:  Ranya K A Virk; Wenli Wu; Luay M Almassalha; Greta M Bauer; Yue Li; David VanDerway; Jane Frederick; Di Zhang; Adam Eshein; Hemant K Roy; Igal Szleifer; Vadim Backman
Journal:  Sci Adv       Date:  2020-01-08       Impact factor: 14.136

6.  Early increase in blood supply (EIBS) is associated with tumor risk in the Azoxymethane model of colon cancer.

Authors:  Sarah Ruderman; Adam Eshein; Vesta Valuckaite; Urszula Dougherty; Anas Almoghrabi; Andrew Gomes; Ajaypal Singh; Baldeep Pabla; Hemant K Roy; John Hart; Marc Bissonnette; Vani Konda; Vadim Backman
Journal:  BMC Cancer       Date:  2018-08-13       Impact factor: 4.430

  6 in total

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