| Literature DB >> 27895543 |
Jorim Anak Ujang1, Soon Hong Kwan2, Mohd Nazri Ismail2, Boon Huat Lim3, Rahmah Noordin1, Nurulhasanah Othman1.
Abstract
BACKGROUND: Excretory-secretory (ES) proteins of E. histolytica are thought to play important roles in the host invasion, metabolism, and defence. Elucidation of the types and functions of E. histolytica ES proteins can further our understanding of the disease pathogenesis. Thus, the aim of this study is to use proteomics approach to better understand the complex ES proteins of the protozoa.Entities:
Keywords: Entamoeba histolytica; Excretory-secretory (ES) proteins; LC–ESI–MS/MS; LC–MALDI–TOF/TOF
Year: 2016 PMID: 27895543 PMCID: PMC5120466 DOI: 10.1186/s12014-016-9135-8
Source DB: PubMed Journal: Clin Proteomics ISSN: 1542-6416 Impact factor: 3.988
Fig. 1SDS-PAGE profile of excretory-secretory (ES) proteins of E. histolytica. ES proteins from E. histolytica separated by 10% SDS-PAGE. Lane 1 protein ladder (BioRad, USA); lane 2, 3, and 4, ES proteins from three independent replicates; lane 5, concentrated RPMI-C-A as control
Fig. 2Excretory-secretory (ES) proteins detected by LC–ESI MS/MS and LC–MALDI TOF/TOF. Venn diagram depicting 219 ES proteins detected through the complementary use of LC–ESI MS/MS and LC–MALDI TOF/TOF. The list of proteins found in LC–ESI MS/MS and LC–MALDI TOF/TOF can be found in Additional files 1 and 2
Top 10 proteins of highest scores detected by LC–ESI–MS/MS
| No | Accession | Name | −10lgP | Matched peptides | Sequence coverage (%) |
|---|---|---|---|---|---|
|
| |||||
| 1 | EHI_150490 | Aldehyde-alcohol dehydrogenase 2 putative | 149.46 | 56 | 73 |
| 2 | EHI_051060 | Pyruvate:ferredoxin oxidoreductase | 148.56 | 50 | 53 |
| 3 | EHI_009530 | Pyruvate phosphate dikinase | 146.95 | 47 | 60 |
| 4 | EHI_006980 | Gal/GalNAc lectin subunit Igl1 | 135.22 | 35 | 39 |
| 5 | EHI_077500 | Galactose-specific adhesin 170kD subunit | 134.04 | 36 | 34 |
| 6 | EHI_030750 | Hypothetical protein | 133.28 | 39 | 50 |
| 7 | EHI_133900 | Galactose-inhibitable lectin 170 kDa subunit putative | 133.14 | 37 | 35 |
| 8 | EHI_044970 | Malic enzyme putative | 132.55 | 33 | 73 |
| 9 | EHI_042370 | Galactose-specific adhesin 170kD subunit putative | 130.92 | 32 | 31 |
| 10 | EHI_166920 | Hypothetical protein | 130.71 | 35 | 43 |
−10lgP A representation of p value, whereby the higher the −10lgP value is, the more significant the match is. A threshold score of above 20 signifies relatively high confidence
Matched peptides The number of high-confidence supporting peptide
Sequence coverage The percentage of protein sequence covered by peptide sequence
Top ten proteins of highest scores detected by LC–MALDI–TOF/TOF
| Accession | Description | Score (%) | Matched peptides | Sequence coverage (%) |
|---|---|---|---|---|
|
| ||||
| EHI_160940 | Aldehyde-alcohol dehydrogenase 2, putative | 28.67 | 17 | 31.8 |
| EHI_150490 | Aldehyde-alcohol dehydrogenase 2 | 28.67 | 17 | 31.8 |
| EHI_130700 | Enolase, putative | 25.52 | 13 | 53.2 |
| EHI_009530 | Pyruvate phosphate dikinase | 20.16 | 8 | 30.9 |
| EHI_044970 | Malic enzyme, putative | 11.96 | 5 | 30.4 |
| EHI_178960 | Acetyl-CoA synthetase, putative | 10.34 | 5 | 20.6 |
| EHI_125950 | Alcohol dehydrogenase, putative | 10 | 5 | 23.2 |
| EHI_050330 | Malic enzyme, putative | 9.84 | 4 | 26.7 |
| EHI_051060 | Pyruvate: ferredoxin oxidoreductase | 8.67 | 3 | 16.5 |
| EHI_107290 | Actin, putative | 8.44 | 5 | 8.44 |
Score (%) Total (ProtScore), a measure of the total amount of evidence for a detected protein. The Total ProtScore is calculated using all the peptides detected for the protein
Matched peptides The number of distinct peptides having at least 95% confidence
Sequence coverage The percentage of matching amino acids from identified peptides having confidence greater than 0 divided by the total number of amino acids in the sequence
Fig. 3Biological function. Categories of ES proteins grouped according to the biological functions. The classifications were generated using Panther version 11.0 released 2016-07-15
Fig. 4Molecular function. Classification of ES proteins into molecular function categories. The classifications were generated using Panther version 11.0 released 2016-07-15
Fig. 5Cellular component. Classification of ES proteins based on their association with cellular components. The classifications were generated using Panther version 11.0 released 2016-07-15