Literature DB >> 27894013

Outer membrane protein design.

Joanna Sg Slusky1.   

Abstract

Membrane proteins are the gateway to the cell. These proteins are also a control center of the cell, as information from the outside is passed through membrane proteins as signals to the cellular machinery. The design of membrane proteins seeks to harness the power of these gateways and signal carriers. This review will focus on the design of the membrane proteins that are in the outer membrane, a membrane which only exists for gram negative bacteria, mitochondria, and chloroplasts. Unlike other membrane proteins, outer membrane proteins are uniquely shaped as β-barrels. Herein, I describe most known examples of membrane β-barrel design to date, focusing particularly on categorizing designs as: Firstly, structural deconstruction; secondly, structural changes; thirdly, chemical function design; and finally, the creation of new folds.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2016        PMID: 27894013      PMCID: PMC5445000          DOI: 10.1016/j.sbi.2016.11.003

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  66 in total

1.  A knowledge-based potential highlights unique features of membrane α-helical and β-barrel protein insertion and folding.

Authors:  Daniel Hsieh; Alexander Davis; Vikas Nanda
Journal:  Protein Sci       Date:  2011-11-23       Impact factor: 6.725

2.  Redesign of a plugged beta-barrel membrane protein.

Authors:  Mohammad M Mohammad; Khalil R Howard; Liviu Movileanu
Journal:  J Biol Chem       Date:  2010-12-28       Impact factor: 5.157

3.  Orientation of beta-barrel proteins OmpA and FhuA in lipid membranes. Chain length dependence from infrared dichroism.

Authors:  Muthu Ramakrishnan; Jian Qu; Cosmin L Pocanschi; Jörg H Kleinschmidt; Derek Marsh
Journal:  Biochemistry       Date:  2005-03-08       Impact factor: 3.162

4.  Increasing the accuracy of solution NMR structures of membrane proteins by application of residual dipolar couplings. High-resolution structure of outer membrane protein A.

Authors:  Tomasz Cierpicki; Binyong Liang; Lukas K Tamm; John H Bushweller
Journal:  J Am Chem Soc       Date:  2006-05-31       Impact factor: 15.419

5.  Siderophore-mediated iron transport: crystal structure of FhuA with bound lipopolysaccharide.

Authors:  A D Ferguson; E Hofmann; J W Coulton; K Diederichs; W Welte
Journal:  Science       Date:  1998-12-18       Impact factor: 47.728

6.  Membrane assembly of the Escherichia coli outer membrane protein OmpA: exploring sequence constraints on transmembrane beta-strands.

Authors:  R Koebnik
Journal:  J Mol Biol       Date:  1999-01-29       Impact factor: 5.469

7.  Wza the translocon for E. coli capsular polysaccharides defines a new class of membrane protein.

Authors:  Changjiang Dong; Konstantinos Beis; Jutta Nesper; Anne L Brunkan-Lamontagne; Bradley R Clarke; Chris Whitfield; James H Naismith
Journal:  Nature       Date:  2006-11-01       Impact factor: 49.962

Review 8.  Membrane proteins by accident or design.

Authors:  John Simms; Paula J Booth
Journal:  Curr Opin Chem Biol       Date:  2013-12       Impact factor: 8.822

9.  Engineering of an E. coli outer membrane protein FhuA with increased channel diameter.

Authors:  Manuel Krewinkel; Tamara Dworeck; Marco Fioroni
Journal:  J Nanobiotechnology       Date:  2011-08-19       Impact factor: 10.435

10.  Pattern of amino acid substitutions in transmembrane domains of β-barrel membrane proteins for detecting remote homologs in bacteria and mitochondria.

Authors:  David Jimenez-Morales; Jie Liang
Journal:  PLoS One       Date:  2011-11-01       Impact factor: 3.240

View more
  16 in total

1.  Structure Determination of Membrane Proteins Using X-Ray Crystallography.

Authors:  Evan Billings; Karl Lundquist; Claire Overly; Karthik Srinivasan; Nicholas Noinaj
Journal:  Methods Mol Biol       Date:  2021

2.  C-terminal kink formation is required for lateral gating in BamA.

Authors:  Karl Lundquist; Jeremy Bakelar; Nicholas Noinaj; James C Gumbart
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-07       Impact factor: 11.205

3.  Aberrantly Large Single-Channel Conductance of Polyhistidine Arm-Containing Protein Nanopores.

Authors:  Avinash Kumar Thakur; Motahareh Ghahari Larimi; Kristin Gooden; Liviu Movileanu
Journal:  Biochemistry       Date:  2017-08-28       Impact factor: 3.162

4.  Modeling intermediates of BamA folding an outer membrane protein.

Authors:  Katie M Kuo; David Ryoo; Karl Lundquist; James C Gumbart
Journal:  Biophys J       Date:  2022-08-04       Impact factor: 3.699

5.  Folding and Misfolding of Human Membrane Proteins in Health and Disease: From Single Molecules to Cellular Proteostasis.

Authors:  Justin T Marinko; Hui Huang; Wesley D Penn; John A Capra; Jonathan P Schlebach; Charles R Sanders
Journal:  Chem Rev       Date:  2019-01-04       Impact factor: 60.622

6.  Kinetics of Membrane Protein-Detergent Interactions Depend on Protein Electrostatics.

Authors:  Aaron J Wolfe; Jack F Gugel; Min Chen; Liviu Movileanu
Journal:  J Phys Chem B       Date:  2018-10-05       Impact factor: 2.991

Review 7.  Water in Nanopores and Biological Channels: A Molecular Simulation Perspective.

Authors:  Charlotte I Lynch; Shanlin Rao; Mark S P Sansom
Journal:  Chem Rev       Date:  2020-08-25       Impact factor: 60.622

8.  Protein Ligand-Induced Amplification in the 1/f Noise of a Protein-Selective Nanopore.

Authors:  Jiaxin Sun; Avinash Kumar Thakur; Liviu Movileanu
Journal:  Langmuir       Date:  2020-12-13       Impact factor: 3.882

9.  Membrane Protein Engineering with Rosetta.

Authors:  Rebecca F Alford; Jeffrey J Gray
Journal:  Methods Mol Biol       Date:  2021

10.  Inward-facing glycine residues create sharp turns in β-barrel membrane proteins.

Authors:  Zijian Zhang; David Ryoo; Curtis Balusek; Atanu Acharya; Marcella Orwick Rydmark; Dirk Linke; James C Gumbart
Journal:  Biochim Biophys Acta Biomembr       Date:  2021-06-17       Impact factor: 4.019

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.