Literature DB >> 27888239

The increasing diversity of functions attributed to the SAFB family of RNA-/DNA-binding proteins.

Michael Norman1, Caroline Rivers1, Youn-Bok Lee2, Jalilah Idris1, James Uney1.   

Abstract

RNA-binding proteins play a central role in cellular metabolism by orchestrating the complex interactions of coding, structural and regulatory RNA species. The SAFB (scaffold attachment factor B) proteins (SAFB1, SAFB2 and SAFB-like transcriptional modulator, SLTM), which are highly conserved evolutionarily, were first identified on the basis of their ability to bind scaffold attachment region DNA elements, but attention has subsequently shifted to their RNA-binding and protein-protein interactions. Initial studies identified the involvement of these proteins in the cellular stress response and other aspects of gene regulation. More recently, the multifunctional capabilities of SAFB proteins have shown that they play crucial roles in DNA repair, processing of mRNA and regulatory RNA, as well as in interaction with chromatin-modifying complexes. With the advent of new techniques for identifying RNA-binding sites, enumeration of individual RNA targets has now begun. This review aims to summarise what is currently known about the functions of SAFB proteins.
© 2016 The Author(s).

Entities:  

Keywords:  RNA-binding proteins; gene expression and regulation; stress granules

Mesh:

Substances:

Year:  2016        PMID: 27888239     DOI: 10.1042/BCJ20160649

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  10 in total

1.  Scaffold attachment factor B suppresses HIV-1 infection of CD4+ T cells by preventing binding of RNA polymerase II to HIV-1's long terminal repeat.

Authors:  Li Ma; Li Sun; Xia Jin; Si-Dong Xiong; Jian-Hua Wang
Journal:  J Biol Chem       Date:  2018-06-10       Impact factor: 5.157

2.  A proteomic approach identifies SAFB-like transcription modulator (SLTM) as a bidirectional regulator of GLI family zinc finger transcription factors.

Authors:  Zilai Zhang; Xiaoming Zhan; Bongwoo Kim; Jiang Wu
Journal:  J Biol Chem       Date:  2019-02-19       Impact factor: 5.157

3.  Scaffold association factor B (SAFB) is required for expression of prenyltransferases and RAS membrane association.

Authors:  Mo Zhou; Leena Kuruvilla; Xiarong Shi; Stephen Viviano; Ian M Ahearn; Caroline R Amendola; Wenjuan Su; Sana Badri; James Mahaffey; Nicole Fehrenbacher; Jane Skok; Joseph Schlessinger; Benjamin E Turk; David A Calderwood; Mark R Philips
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-30       Impact factor: 11.205

4.  "Protein aggregates" contain RNA and DNA, entrapped by misfolded proteins but largely rescued by slowing translational elongation.

Authors:  Robert J Shmookler Reis; Ramani Atluri; Meenakshisundaram Balasubramaniam; Jay Johnson; Akshatha Ganne; Srinivas Ayyadevara
Journal:  Aging Cell       Date:  2021-03-31       Impact factor: 9.304

5.  High-resolution mapping of function and protein binding in an RNA nuclear enrichment sequence.

Authors:  Yoav Lubelsky; Binyamin Zuckerman; Igor Ulitsky
Journal:  EMBO J       Date:  2021-05-03       Impact factor: 14.012

6.  Abnormal scaffold attachment factor 1 expression and localization in spinocerebellar ataxias and Huntington's chorea.

Authors:  Nicola Buckner; Kevin C Kemp; Helen L Scott; Gongyu Shi; Caroline Rivers; Andriana Gialeli; Liang-Fong Wong; Oscar Cordero-LLana; Nicholas Allen; Alastair Wilkins; James B Uney
Journal:  Brain Pathol       Date:  2020-07-13       Impact factor: 6.508

7.  Genetic information from discordant sibling pairs points to ESRP2 as a candidate trans-acting regulator of the CF modifier gene SCNN1B.

Authors:  Tim Becker; Andreas Pich; Stephanie Tamm; Silke Hedtfeld; Mohammed Ibrahim; Janine Altmüller; Nina Dalibor; Mohammad Reza Toliat; Sabina Janciauskiene; Burkhard Tümmler; Frauke Stanke
Journal:  Sci Rep       Date:  2020-12-31       Impact factor: 4.379

8.  Context-specific effects of sequence elements on subcellular localization of linear and circular RNAs.

Authors:  Maya Ron; Igor Ulitsky
Journal:  Nat Commun       Date:  2022-05-05       Impact factor: 17.694

9.  RNA m6A modification orchestrates a LINE-1-host interaction that facilitates retrotransposition and contributes to long gene vulnerability.

Authors:  Feng Xiong; Ruoyu Wang; Joo-Hyung Lee; Shenglan Li; Shin-Fu Chen; Zian Liao; Lana Al Hasani; Phuoc T Nguyen; Xiaoyu Zhu; Joanna Krakowiak; Dung-Fang Lee; Leng Han; Kuang-Lei Tsai; Ying Liu; Wenbo Li
Journal:  Cell Res       Date:  2021-06-09       Impact factor: 46.297

Review 10.  Interplay of RNA-Binding Proteins and microRNAs in Neurodegenerative Diseases.

Authors:  Chisato Kinoshita; Noriko Kubota; Koji Aoyama
Journal:  Int J Mol Sci       Date:  2021-05-18       Impact factor: 5.923

  10 in total

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