Literature DB >> 27887974

Perusal of parasitic nematode 'omics in the post-genomic era.

Jonathan D Stoltzfus1, Adeiye A Pilgrim2, De'Broski R Herbert3.   

Abstract

The advent of high-throughput, next-generation sequencing methods combined with advances in computational biology and bioinformatics have greatly accelerated discovery within biomedical research. This "post-genomics" era has ushered in powerful approaches allowing one to quantify RNA transcript and protein abundance for every gene in the genome - often for multiple conditions. Herein, we chronicle how the post-genomics era has advanced our overall understanding of parasitic nematodes through transcriptomics and proteomics and highlight some of the important advances made in each major nematode clade. We primarily focus on organisms relevant to human health, given that nematode infections significantly impact disability-adjusted life years (DALY) scores within the developing world, but we also discuss organisms of veterinary importance as well as those used as laboratory models. As such, we envision that this review will serve as a comprehensive resource for those seeking a better understanding of basic parasitic nematode biology as well as those interested in targets for vaccination and pharmacological intervention.
Copyright © 2016 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Genome; Nematode; Parasite; Proteome; Transcriptome

Mesh:

Year:  2016        PMID: 27887974      PMCID: PMC5440216          DOI: 10.1016/j.molbiopara.2016.11.003

Source DB:  PubMed          Journal:  Mol Biochem Parasitol        ISSN: 0166-6851            Impact factor:   1.759


  111 in total

1.  Genomics and transcriptomics across the diversity of the Nematoda.

Authors:  M Blaxter; S Kumar; G Kaur; G Koutsovoulos; B Elsworth
Journal:  Parasite Immunol       Date:  2012 Feb-Mar       Impact factor: 2.280

2.  Identification of differentially expressed proteins between free-living and activated third-stage larvae of Haemonchus contortus.

Authors:  Fang Wang; Lixin Xu; Xiaokai Song; Xiangrui Li; Ruofeng Yan
Journal:  Vet Parasitol       Date:  2015-11-10       Impact factor: 2.738

Review 3.  Loiasis: African eye worm.

Authors:  Jeannie J Padgett; Kathryn H Jacobsen
Journal:  Trans R Soc Trop Med Hyg       Date:  2008-05-07       Impact factor: 2.184

4.  Proteomics analysis of the excretory/secretory component of the blood-feeding stage of the hookworm, Ancylostoma caninum.

Authors:  Jason Mulvenna; Brett Hamilton; Shivashankar H Nagaraj; Danielle Smyth; Alex Loukas; Jeffrey J Gorman
Journal:  Mol Cell Proteomics       Date:  2008-08-26       Impact factor: 5.911

5.  Annotation of two large contiguous regions from the Haemonchus contortus genome using RNA-seq and comparative analysis with Caenorhabditis elegans.

Authors:  Roz Laing; Martin Hunt; Anna V Protasio; Gary Saunders; Karen Mungall; Steven Laing; Frank Jackson; Michael Quail; Robin Beech; Matthew Berriman; John S Gilleard
Journal:  PLoS One       Date:  2011-08-15       Impact factor: 3.240

6.  Transcriptome of small regulatory RNAs in the development of the zoonotic parasite Trichinella spiralis.

Authors:  Xiaolei Liu; Yanxia Song; Huijun Lu; Bin Tang; Xianyu Piao; Nan Hou; Shuai Peng; Ning Jiang; Jigang Yin; Mingyuan Liu; Qijun Chen
Journal:  PLoS One       Date:  2011-11-01       Impact factor: 3.240

7.  A deep sequencing approach to comparatively analyze the transcriptome of lifecycle stages of the filarial worm, Brugia malayi.

Authors:  Young-Jun Choi; Elodie Ghedin; Matthew Berriman; Jacqueline McQuillan; Nancy Holroyd; George F Mayhew; Bruce M Christensen; Michelle L Michalski
Journal:  PLoS Negl Trop Dis       Date:  2011-12-13

8.  Genetic blueprint of the zoonotic pathogen Toxocara canis.

Authors:  Xing-Quan Zhu; Pasi K Korhonen; Huimin Cai; Neil D Young; Peter Nejsum; Georg von Samson-Himmelstjerna; Peter R Boag; Patrick Tan; Qiye Li; Jiumeng Min; Yulan Yang; Xiuhua Wang; Xiaodong Fang; Ross S Hall; Andreas Hofmann; Paul W Sternberg; Aaron R Jex; Robin B Gasser
Journal:  Nat Commun       Date:  2015-02-04       Impact factor: 14.919

9.  The genome and developmental transcriptome of the strongylid nematode Haemonchus contortus.

Authors:  Erich M Schwarz; Pasi K Korhonen; Bronwyn E Campbell; Neil D Young; Aaron R Jex; Abdul Jabbar; Ross S Hall; Alinda Mondal; Adina C Howe; Jason Pell; Andreas Hofmann; Peter R Boag; Xing-Quan Zhu; T Gregory; Alex Loukas; Brian A Williams; Igor Antoshechkin; C Brown; Paul W Sternberg; Robin B Gasser
Journal:  Genome Biol       Date:  2013-08-28       Impact factor: 13.583

10.  WormBase 2016: expanding to enable helminth genomic research.

Authors:  Kevin L Howe; Bruce J Bolt; Scott Cain; Juancarlos Chan; Wen J Chen; Paul Davis; James Done; Thomas Down; Sibyl Gao; Christian Grove; Todd W Harris; Ranjana Kishore; Raymond Lee; Jane Lomax; Yuling Li; Hans-Michael Muller; Cecilia Nakamura; Paulo Nuin; Michael Paulini; Daniela Raciti; Gary Schindelman; Eleanor Stanley; Mary Ann Tuli; Kimberly Van Auken; Daniel Wang; Xiaodong Wang; Gary Williams; Adam Wright; Karen Yook; Matthew Berriman; Paul Kersey; Tim Schedl; Lincoln Stein; Paul W Sternberg
Journal:  Nucleic Acids Res       Date:  2015-11-17       Impact factor: 16.971

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  6 in total

Review 1.  Harnessing helminth-driven immunoregulation in the search for novel therapeutic modalities.

Authors:  Stephanie M Ryan; Ramon M Eichenberger; Roland Ruscher; Paul R Giacomin; Alex Loukas
Journal:  PLoS Pathog       Date:  2020-05-14       Impact factor: 6.823

2.  A core set of venom proteins is released by entomopathogenic nematodes in the genus Steinernema.

Authors:  Dennis Z Chang; Lorrayne Serra; Dihong Lu; Ali Mortazavi; Adler R Dillman
Journal:  PLoS Pathog       Date:  2019-05-01       Impact factor: 6.823

Review 3.  Combating Parasitic Nematode Infections, Newly Discovered Antinematode Compounds from Marine Epiphytic Bacteria.

Authors:  Nor Hawani Salikin; Jadranka Nappi; Marwan E Majzoub; Suhelen Egan
Journal:  Microorganisms       Date:  2020-12-11

4.  Untargeted Multimodal Metabolomics Investigation of the Haemonchus contortus Exsheathment Secretome.

Authors:  Nikola Palevich; Paul H Maclean; Paul M Candy; Wendy Taylor; Ivona Mladineo; Mingshu Cao
Journal:  Cells       Date:  2022-08-15       Impact factor: 7.666

Review 5.  Advances in Omic Studies Drive Discoveries in the Biology of Anisakid Nematodes.

Authors:  Stefano D'Amelio; Fabrizio Lombardo; Antonella Pizzarelli; Ilaria Bellini; Serena Cavallero
Journal:  Genes (Basel)       Date:  2020-07-15       Impact factor: 4.096

Review 6.  Prospects of Using High-Throughput Proteomics to Underpin the Discovery of Animal Host-Nematode Interactions.

Authors:  Tao Wang; Robin B Gasser
Journal:  Pathogens       Date:  2021-06-30
  6 in total

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