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Literature DB >> 27886167

Mapping of long-range chromatin interactions by proximity ligation-assisted ChIP-seq.

Rongxin Fang^1,2, Miao Yu¹, Guoqiang Li¹, Sora Chee¹, Tristin Liu¹, Anthony D Schmitt^1,3, Bing Ren^1,4.

Abstract

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Year: 2016 PMID： 27886167 PMCID： PMC5143423 DOI： 10.1038/cr.2016.137

Source DB: PubMed Journal: Cell Res ISSN： 1001-0602 Impact factor: 25.617

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15 in total

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Authors: Zhonghui Tang; Oscar Junhong Luo; Xingwang Li; Meizhen Zheng; Jacqueline Jufen Zhu; Przemyslaw Szalaj; Pawel Trzaskoma; Adriana Magalska; Jakub Wlodarczyk; Blazej Ruszczycki; Paul Michalski; Emaly Piecuch; Ping Wang; Danjuan Wang; Simon Zhongyuan Tian; May Penrad-Mobayed; Laurent M Sachs; Xiaoan Ruan; Chia-Lin Wei; Edison T Liu; Grzegorz M Wilczynski; Dariusz Plewczynski; Guoliang Li; Yijun Ruan
Journal: Cell Date: 2015-12-10 Impact factor: 41.582

Review 2. Topology of mammalian developmental enhancers and their regulatory landscapes.

Authors: Wouter de Laat; Denis Duboule
Journal: Nature Date: 2013-10-24 Impact factor: 49.962

Review 3. Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data.

Authors: Job Dekker; Marc A Marti-Renom; Leonid A Mirny
Journal: Nat Rev Genet Date: 2013-05-09 Impact factor: 53.242

Review 4. The role of chromosome domains in shaping the functional genome.

Authors: Tom Sexton; Giacomo Cavalli
Journal: Cell Date: 2015-03-12 Impact factor: 41.582

5. Chromatin Interaction Analysis with Paired-End Tag (ChIA-PET) sequencing technology and application.

Authors: Guoliang Li; Liuyang Cai; Huidan Chang; Ping Hong; Qiangwei Zhou; Ekaterina V Kulakova; Nikolay A Kolchanov; Yijun Ruan
Journal: BMC Genomics Date: 2014-12-19 Impact factor: 3.969

Review 6. The 3D genome in transcriptional regulation and pluripotency.

Authors: David U Gorkin; Danny Leung; Bing Ren
Journal: Cell Stem Cell Date: 2014-06-05 Impact factor: 24.633

7. A map of the cis-regulatory sequences in the mouse genome.

Authors: Yin Shen; Feng Yue; David F McCleary; Zhen Ye; Lee Edsall; Samantha Kuan; Ulrich Wagner; Jesse Dixon; Leonard Lee; Victor V Lobanenkov; Bing Ren
Journal: Nature Date: 2012-08-02 Impact factor: 49.962

8. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.

Authors: Suhas S P Rao; Miriam H Huntley; Neva C Durand; Elena K Stamenova; Ivan D Bochkov; James T Robinson; Adrian L Sanborn; Ido Machol; Arina D Omer; Eric S Lander; Erez Lieberman Aiden
Journal: Cell Date: 2014-12-11 Impact factor: 41.582

9. An oestrogen-receptor-alpha-bound human chromatin interactome.

Authors: Melissa J Fullwood; Mei Hui Liu; You Fu Pan; Jun Liu; Han Xu; Yusoff Bin Mohamed; Yuriy L Orlov; Stoyan Velkov; Andrea Ho; Poh Huay Mei; Elaine G Y Chew; Phillips Yao Hui Huang; Willem-Jan Welboren; Yuyuan Han; Hong Sain Ooi; Pramila N Ariyaratne; Vinsensius B Vega; Yanquan Luo; Peck Yean Tan; Pei Ye Choy; K D Senali Abayratna Wansa; Bing Zhao; Kar Sian Lim; Shi Chi Leow; Jit Sin Yow; Roy Joseph; Haixia Li; Kartiki V Desai; Jane S Thomsen; Yew Kok Lee; R Krishna Murthy Karuturi; Thoreau Herve; Guillaume Bourque; Hendrik G Stunnenberg; Xiaoan Ruan; Valere Cacheux-Rataboul; Wing-Kin Sung; Edison T Liu; Chia-Lin Wei; Edwin Cheung; Yijun Ruan
Journal: Nature Date: 2009-11-05 Impact factor: 49.962

10. Chromatin connectivity maps reveal dynamic promoter-enhancer long-range associations.

Authors: Yubo Zhang; Chee-Hong Wong; Ramon Y Birnbaum; Guoliang Li; Rebecca Favaro; Chew Yee Ngan; Joanne Lim; Eunice Tai; Huay Mei Poh; Eleanor Wong; Fabianus Hendriyan Mulawadi; Wing-Kin Sung; Silvia Nicolis; Nadav Ahituv; Yijun Ruan; Chia-Lin Wei
Journal: Nature Date: 2013-11-10 Impact factor: 49.962

109 in total

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Journal: Mol Cell Date: 2020-06-26 Impact factor: 17.970

2. Functional analysis of PCSK2 coding variants: A founder effect in the Old Order Amish population.

Authors: Alexandra Winters; Bruno Ramos-Molina; Timothy S Jarvela; Laura Yerges-Armstrong; Toni I Pollin; Iris Lindberg
Journal: Diabetes Res Clin Pract Date: 2017-07-03 Impact factor: 5.602

Review 3. 3D Chromosomal Landscapes in Hematopoiesis and Immunity.

Authors: Andreas Kloetgen; Palaniraja Thandapani; Aristotelis Tsirigos; Iannis Aifantis
Journal: Trends Immunol Date: 2019-08-15 Impact factor: 16.687

Review 4. Towards a comprehensive catalogue of validated and target-linked human enhancers.

Authors: Molly Gasperini; Jacob M Tome; Jay Shendure
Journal: Nat Rev Genet Date: 2020-01-27 Impact factor: 53.242

Review 5. Functional Assays to Screen and Dissect Genomic Hits: Doubling Down on the National Investment in Genomic Research.

Authors: Kiran Musunuru; Daniel Bernstein; F Sessions Cole; Mustafa K Khokha; Frank S Lee; Shin Lin; Thomas V McDonald; Ivan P Moskowitz; Thomas Quertermous; Vijay G Sankaran; David A Schwartz; Edwin K Silverman; Xiaobo Zhou; Ahmed A K Hasan; Xiao-Zhong James Luo
Journal: Circ Genom Precis Med Date: 2018-04

6. GRID-seq for comprehensive analysis of global RNA-chromatin interactions.

Authors: Bing Zhou; Xiao Li; Daji Luo; Do-Hwan Lim; Yu Zhou; Xiang-Dong Fu
Journal: Nat Protoc Date: 2019-06-07 Impact factor: 13.491

7. Oncogenic Notch Promotes Long-Range Regulatory Interactions within Hyperconnected 3D Cliques.

Authors: Jelena Petrovic; Yeqiao Zhou; Maria Fasolino; Naomi Goldman; Gregory W Schwartz; Maxwell R Mumbach; Son C Nguyen; Kelly S Rome; Yogev Sela; Zachary Zapataro; Stephen C Blacklow; Michael J Kruhlak; Junwei Shi; Jon C Aster; Eric F Joyce; Shawn C Little; Golnaz Vahedi; Warren S Pear; Robert B Faryabi
Journal: Mol Cell Date: 2019-02-07 Impact factor: 17.970