Literature DB >> 27882545

Low abundant soil bacteria can be metabolically versatile and fast growing.

Viola Kurm1, Wim H van der Putten1,2, Wietse de Boer3,4, Suzanne Naus-Wiezer5, W H Gera Hol1.   

Abstract

The abundance of species is assumed to depend on their life history traits, such as growth rate and resource specialization. However, this assumption has not been tested for bacteria. Here we investigate how abundance of soil bacteria relates to slow growth and substrate specialization (oligotrophy) vs. fast growth and substrate generalization (copiotrophy). We collected 47 saprotrophic soil bacterial isolates of differing abundances and measured their growth rate and the ability to use a variety of single carbon sources. Opposite to our expectation, there was no relationship between abundance in soil and the measured growth rate or substrate utilization profile (SUP). However, isolates with lower growth rates used fewer substrates than faster growing ones supporting the assumption that growth rate may relate to substrate specialization. Interestingly, growth rate and SUP were correlated with phylogeny, rather than with abundance in soil. Most markedly, Gammaproteobacteria on average grew significantly faster and were able to use more substrates than other bacterial classes, whereas Alphaproteobacteria were growing relatively slowly and used fewer substrates. This finding suggests that growth and substrate utilization are phylogenetically deeply conserved. We conclude that growth rate and substrate utilization of soil bacteria are not general determinants of their abundance. Future studies on explaining bacterial abundance need to determine how other factors, such as competition, predation and abiotic factors may contribute to rarity or abundance in soil bacteria.
© 2016 by the Ecological Society of America.

Entities:  

Keywords:  bacterial abundance; life-history traits; niche breadth; phylogeny

Mesh:

Substances:

Year:  2017        PMID: 27882545     DOI: 10.1002/ecy.1670

Source DB:  PubMed          Journal:  Ecology        ISSN: 0012-9658            Impact factor:   5.499


  18 in total

1.  Decomposer food web in a deciduous forest shows high share of generalist microorganisms and importance of microbial biomass recycling.

Authors:  Ruben López-Mondéjar; Vendula Brabcová; Martina Štursová; Anna Davidová; Jan Jansa; Tomaš Cajthaml; Petr Baldrian
Journal:  ISME J       Date:  2018-02-28       Impact factor: 10.302

2.  Metagenomic views on taxonomic and functional profiles of the Himalayan Tsomgo cold lake and unveiling its deterzome potential.

Authors:  Ashutosh Kumar Singh; Megha Kumari; Nitish Sharma; Amit Kumar Rai; Sudhir P Singh
Journal:  Curr Genet       Date:  2022-08-05       Impact factor: 2.695

3.  Drought Legacy Effects on the Composition of Soil Fungal and Prokaryote Communities.

Authors:  Annelein Meisner; Samuel Jacquiod; Basten L Snoek; Freddy C Ten Hooven; Wim H van der Putten
Journal:  Front Microbiol       Date:  2018-03-07       Impact factor: 5.640

4.  Cultivation-success of rare soil bacteria is not influenced by incubation time and growth medium.

Authors:  Viola Kurm; Wim H van der Putten; W H Gera Hol
Journal:  PLoS One       Date:  2019-01-10       Impact factor: 3.240

5.  Competition and predation as possible causes of bacterial rarity.

Authors:  Viola Kurm; Wim H van der Putten; Simone Weidner; Stefan Geisen; Basten L Snoek; Tanja Bakx; Wilhelmina H Gera Hol
Journal:  Environ Microbiol       Date:  2019-03-18       Impact factor: 5.491

Review 6.  Drought Stress and Root-Associated Bacterial Communities.

Authors:  Dan Naylor; Devin Coleman-Derr
Journal:  Front Plant Sci       Date:  2018-01-09       Impact factor: 5.753

7.  Conditionally Rare Taxa Contribute but Do Not Account for Changes in Soil Prokaryotic Community Structure.

Authors:  Rachel Kaminsky; Sergio E Morales
Journal:  Front Microbiol       Date:  2018-04-27       Impact factor: 5.640

8.  Niche and fitness differences determine invasion success and impact in laboratory bacterial communities.

Authors:  Shao-Peng Li; Jiaqi Tan; Xian Yang; Chao Ma; Lin Jiang
Journal:  ISME J       Date:  2018-09-25       Impact factor: 10.302

9.  Rapid Shifts in Bacterial Community Assembly under Static and Dynamic Hydration Conditions in Porous Media.

Authors:  Hannah Kleyer; Robin Tecon; Dani Or
Journal:  Appl Environ Microbiol       Date:  2019-12-13       Impact factor: 4.792

10.  Effect of Host, Environment and Fungal Growth on Fungal Leaf Endophyte Communities in Taiwan.

Authors:  Yu-Ling Huang
Journal:  J Fungi (Basel)       Date:  2020-10-23
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