Literature DB >> 27879393

Natural Variation of Molecular and Morphological Gibberellin Responses.

Youn-Jeong Nam1,2,3,4, Dorota Herman1,2,3,4, Jonas Blomme1,2,3,4, Eunyoung Chae1,2,3,4, Mikiko Kojima1,2,3,4, Frederik Coppens1,2,3,4, Veronique Storme1,2,3,4, Twiggy Van Daele1,2,3,4, Stijn Dhondt1,2,3,4, Hitoshi Sakakibara1,2,3,4, Detlef Weigel1,2,3,4, Dirk Inzé5,6,7,8, Nathalie Gonzalez1,2,3,4.   

Abstract

Although phytohormones such as gibberellins are essential for many conserved aspects of plant physiology and development, plants vary greatly in their responses to these regulatory compounds. Here, we use genetic perturbation of endogenous gibberellin levels to probe the extent of intraspecific variation in gibberellin responses in natural accessions of Arabidopsis (Arabidopsis thaliana). We find that these accessions vary greatly in their ability to buffer the effects of overexpression of GA20ox1, encoding a rate-limiting enzyme for gibberellin biosynthesis, with substantial differences in bioactive gibberellin concentrations as well as transcriptomes and growth trajectories. These findings demonstrate a surprising level of flexibility in the wiring of regulatory networks underlying hormone metabolism and signaling.
© 2017 American Society of Plant Biologists. All Rights Reserved.

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Year:  2016        PMID: 27879393      PMCID: PMC5210761          DOI: 10.1104/pp.16.01626

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  49 in total

1.  Growth stage-based phenotypic analysis of Arabidopsis: a model for high throughput functional genomics in plants.

Authors:  D C Boyes; A M Zayed; R Ascenzi; A J McCaskill; N E Hoffman; K R Davis; J Görlach
Journal:  Plant Cell       Date:  2001-07       Impact factor: 11.277

2.  Exit from proliferation during leaf development in Arabidopsis thaliana: a not-so-gradual process.

Authors:  Megan Andriankaja; Stijn Dhondt; Stefanie De Bodt; Hannes Vanhaeren; Frederik Coppens; Liesbeth De Milde; Per Mühlenbock; Aleksandra Skirycz; Nathalie Gonzalez; Gerrit T S Beemster; Dirk Inzé
Journal:  Dev Cell       Date:  2012-01-05       Impact factor: 12.270

3.  A local maximum in gibberellin levels regulates maize leaf growth by spatial control of cell division.

Authors:  Hilde Nelissen; Bart Rymen; Yusuke Jikumaru; Kirin Demuynck; Mieke Van Lijsebettens; Yuji Kamiya; Dirk Inzé; Gerrit T S Beemster
Journal:  Curr Biol       Date:  2012-06-07       Impact factor: 10.834

4.  Integration of biological networks and gene expression data using Cytoscape.

Authors:  Melissa S Cline; Michael Smoot; Ethan Cerami; Allan Kuchinsky; Nerius Landys; Chris Workman; Rowan Christmas; Iliana Avila-Campilo; Michael Creech; Benjamin Gross; Kristina Hanspers; Ruth Isserlin; Ryan Kelley; Sarah Killcoyne; Samad Lotia; Steven Maere; John Morris; Keiichiro Ono; Vuk Pavlovic; Alexander R Pico; Aditya Vailaya; Peng-Liang Wang; Annette Adler; Bruce R Conklin; Leroy Hood; Martin Kuiper; Chris Sander; Ilya Schmulevich; Benno Schwikowski; Guy J Warner; Trey Ideker; Gary D Bader
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

5.  Natural Variation in Gene Expression Modulates the Severity of Mutant Phenotypes.

Authors:  Victoria Vu; Adrian J Verster; Michael Schertzberg; Tungalag Chuluunbaatar; Mark Spensley; Djina Pajkic; G Traver Hart; Jason Moffat; Andrew G Fraser
Journal:  Cell       Date:  2015-07-16       Impact factor: 41.582

Review 6.  Gibberellin receptor and its role in gibberellin signaling in plants.

Authors:  Miyako Ueguchi-Tanaka; Masatoshi Nakajima; Ashikari Motoyuki; Makoto Matsuoka
Journal:  Annu Rev Plant Biol       Date:  2007       Impact factor: 26.379

7.  Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences.

Authors:  Jeremy Goecks; Anton Nekrutenko; James Taylor
Journal:  Genome Biol       Date:  2010-08-25       Impact factor: 13.583

8.  HTSeq--a Python framework to work with high-throughput sequencing data.

Authors:  Simon Anders; Paul Theodor Pyl; Wolfgang Huber
Journal:  Bioinformatics       Date:  2014-09-25       Impact factor: 6.937

Review 9.  The genes of the Green Revolution.

Authors:  Peter Hedden
Journal:  Trends Genet       Date:  2003-01       Impact factor: 11.639

10.  GoMapMan: integration, consolidation and visualization of plant gene annotations within the MapMan ontology.

Authors:  Živa Ramsak; Špela Baebler; Ana Rotter; Matej Korbar; Igor Mozetic; Björn Usadel; Kristina Gruden
Journal:  Nucleic Acids Res       Date:  2013-11-04       Impact factor: 16.971

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  5 in total

1.  Exogenous GA3 application altered morphology, anatomic and transcriptional regulatory networks of hormones in Eucalyptus grandis.

Authors:  Qian-Yu Liu; Guang-Sheng Guo; Zhen-Fei Qiu; Xiao-Dan Li; Bing-Shan Zeng; Chun-Jie Fan
Journal:  Protoplasma       Date:  2018-02-08       Impact factor: 3.356

2.  Nocturnal gibberellin biosynthesis is carbon dependent and adjusts leaf expansion rates to variable conditions.

Authors:  Putri Prasetyaningrum; Lorenzo Mariotti; Maria Cristina Valeri; Giacomo Novi; Stijn Dhondt; Dirk Inzé; Pierdomenico Perata; Hans van Veen
Journal:  Plant Physiol       Date:  2021-02-25       Impact factor: 8.340

3.  Natural variation of hormone levels in Arabidopsis roots and correlations with complex root architecture.

Authors:  Sangseok Lee; Lidiya I Sergeeva; Dick Vreugdenhil
Journal:  J Integr Plant Biol       Date:  2018-02-06       Impact factor: 7.061

4.  A genome-wide association study reveals a novel regulator of ovule number and fertility in Arabidopsis thaliana.

Authors:  Jing Yuan; Sharon A Kessler
Journal:  PLoS Genet       Date:  2019-02-11       Impact factor: 5.917

Review 5.  Decoding Plant-Environment Interactions That Influence Crop Agronomic Traits.

Authors:  Keiichi Mochida; Ryuei Nishii; Takashi Hirayama
Journal:  Plant Cell Physiol       Date:  2020-08-01       Impact factor: 4.927

  5 in total

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