Literature DB >> 27873272

Analysis of Viral and Cellular MicroRNAs in EBV-Infected Cells.

Rebecca L Skalsky1.   

Abstract

MicroRNAs are small, noncoding RNAs that posttranscriptionally regulate gene expression. The discovery of this relatively new mode of gene regulation as well as studies showing the prognostic value of viral and cellular miRNAs as biomarkers, such as in cancer progression, has stimulated the development of many methods to characterize miRNAs. EBV encodes 25 viral precursor microRNAs within its genome that are expressed during lytic and latent infection. In addition to viral miRNAs, EBV infection induces the expression of specific cellular oncogenic miRNAs, such as miR-155, miR-146a, miR-21, and others, that can contribute to the persistence of latently infected cells. This chapter describes several current techniques used to identify and detect the expression of viral and cellular miRNAs in EBV-infected cells.

Entities:  

Keywords:  BART; BHRF1; Deep sequencing; Luciferase assay; MicroRNA; Primer extension; RIP-seq; RISC; RNA isolation; Stem-loop qRT-PCR

Mesh:

Substances:

Year:  2017        PMID: 27873272      PMCID: PMC5685176          DOI: 10.1007/978-1-4939-6655-4_9

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  40 in total

1.  EBV and human microRNAs co-target oncogenic and apoptotic viral and human genes during latency.

Authors:  Kasandra J Riley; Gabrielle S Rabinowitz; Therese A Yario; Joseph M Luna; Robert B Darnell; Joan A Steitz
Journal:  EMBO J       Date:  2012-03-30       Impact factor: 11.598

2.  A combined computational and microarray-based approach identifies novel microRNAs encoded by human gamma-herpesviruses.

Authors:  Adam Grundhoff; Christopher S Sullivan; Don Ganem
Journal:  RNA       Date:  2006-03-15       Impact factor: 4.942

Review 3.  Viruses, microRNAs, and host interactions.

Authors:  Rebecca L Skalsky; Bryan R Cullen
Journal:  Annu Rev Microbiol       Date:  2010       Impact factor: 15.500

4.  Evolutionary conservation of primate lymphocryptovirus microRNA targets.

Authors:  Rebecca L Skalsky; Dong Kang; Sarah D Linnstaedt; Bryan R Cullen
Journal:  J Virol       Date:  2013-11-20       Impact factor: 5.103

5.  Kaposi's sarcoma-associated herpesvirus encodes a mimic of cellular miR-23.

Authors:  Mark Manzano; Priscilla Shamulailatpam; Archana N Raja; Eva Gottwein
Journal:  J Virol       Date:  2013-08-28       Impact factor: 5.103

6.  Divergent target recognition by coexpressed 5'-isomiRs of miR-142-3p and selective viral mimicry.

Authors:  Mark Manzano; Eleonora Forte; Archana N Raja; Matthew J Schipma; Eva Gottwein
Journal:  RNA       Date:  2015-07-02       Impact factor: 4.942

7.  EBV BART MicroRNAs Target Multiple Pro-apoptotic Cellular Genes to Promote Epithelial Cell Survival.

Authors:  Dong Kang; Rebecca L Skalsky; Bryan R Cullen
Journal:  PLoS Pathog       Date:  2015-06-12       Impact factor: 6.823

8.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.

Authors:  Mark D Robinson; Davis J McCarthy; Gordon K Smyth
Journal:  Bioinformatics       Date:  2009-11-11       Impact factor: 6.937

9.  Subtractive hybridization identifies novel differentially expressed ncRNA species in EBV-infected human B cells.

Authors:  Jan Mrázek; Simone B Kreutmayer; Friedrich A Grässer; Norbert Polacek; Alexander Hüttenhofer
Journal:  Nucleic Acids Res       Date:  2007-05-03       Impact factor: 16.971

10.  Differential RISC association of endogenous human microRNAs predicts their inhibitory potential.

Authors:  Omar Flores; Edward M Kennedy; Rebecca L Skalsky; Bryan R Cullen
Journal:  Nucleic Acids Res       Date:  2014-01-23       Impact factor: 16.971

View more
  5 in total

1.  Prediction of MicroRNAs in the Epstein-Barr Virus Reveals Potential Targets for the Viral Self-Regulation.

Authors:  Victor Serrano-Solis; Angelica Cardoso Carlos; Vinicius Maracaja-Coutinho; Sávio Torres de Farias
Journal:  Indian J Microbiol       Date:  2018-12-28       Impact factor: 2.461

Review 2.  Dairy consumption and hepatocellular carcinoma risk.

Authors:  Bodo C Melnik
Journal:  Ann Transl Med       Date:  2021-04

Review 3.  Epstein barr virus encodes miRNAs to assist host immune escape.

Authors:  Weiming Li; Cong He; Jiayi Wu; Dazhi Yang; Weihong Yi
Journal:  J Cancer       Date:  2020-02-03       Impact factor: 4.207

Review 4.  Next-generation sequencing: A new avenue to understand viral RNA-protein interactions.

Authors:  Yiyang Zhou; Stephanea L Sotcheff; Andrew L Routh
Journal:  J Biol Chem       Date:  2022-04-09       Impact factor: 5.486

5.  MicroRNAs are minor constituents of extracellular vesicles that are rarely delivered to target cells.

Authors:  Manuel Albanese; Yen-Fu Adam Chen; Corinna Hüls; Kathrin Gärtner; Takanobu Tagawa; Ernesto Mejias-Perez; Oliver T Keppler; Christine Göbel; Reinhard Zeidler; Mikhail Shein; Anne K Schütz; Wolfgang Hammerschmidt
Journal:  PLoS Genet       Date:  2021-12-06       Impact factor: 6.020

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.