| Literature DB >> 27870913 |
Daniela Husser1, Petra Büttner1, Laura Ueberham1, Borislav Dinov1, Philipp Sommer1, Arash Arya1, Gerhard Hindricks1, Andreas Bollmann1.
Abstract
BACKGROUND: Left atrial enlargement and persistent atrial fibrillation (AF) are well-known predictors for arrhythmia recurrence after AF catheter ablation (LRAF). In this study, by using pathway enrichment analysis of GWAS data, we tested the hypothesis that genetic pathways associated with these phenotypes are also associated with LRAF.Entities:
Mesh:
Year: 2016 PMID: 27870913 PMCID: PMC5117760 DOI: 10.1371/journal.pone.0167008
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Fig 1Flow chart of pathway enrichment analysis based on GWAS of LAD, AF type and AF recurrence after catheter ablation.
Patient characteristics.
| Total | AF recurrence | No recurrence | p value | |
|---|---|---|---|---|
| Age (years) | 60 ± 10 | 61 ± 10 | 59 ± 10 | 7.55E-03 |
| Male gender (%) | 68 | 70 | 67 | ns |
| Idiopathic AF (%) | 14 | 15 | 12 | ns |
| Persistent AF (%) | 44 | 53 | 35 | 1.00E-06 |
| LAD (mm) | 43 ± 6 | 44 ± 6 | 42 ± 6 | 5.42E-05 |
| LVEF (%) | 59 ± 10 | 58 ± 10 | 59 ± 9 | ns |
* One patient was lost to follow-up
Calcium signaling and ECM-receptor interaction pathways and their association with LAD, AF type and arrhythmia recurrence using two enrichment tools.
| Enrichment tool | Phenotype | C | O | E | R | rawP | adjP |
|---|---|---|---|---|---|---|---|
| WebGestalt | LAD | 177 | 85 | 27.12 | 3.13 | 1.2E-24 | 2.7E-22 |
| LRAF | 177 | 77 | 26.62 | 2.89 | 9.7E-20 | 2.2E-17 | |
| GATHER | LAD | 196 | 88 | 4.0E-05 | 5.2E-03 | ||
| LRAF | 196 | 81 | 4.3E-04 | 2.9E-02 | |||
| WebGestalt | AF type | 85 | 47 | 12.78 | 3.68 | 9.3E-18 | 2.1E-15 |
| LRAF | 85 | 41 | 12.78 | 3.21 | 5.1E-13 | 1.2E-10 | |
| GATHER | AF type | 86 | 45 | 7.2E-06 | 9.3E-04 | ||
| LRAF | 86 | 41 | 4.2E-04 | 2.9E-02 | |||
C, the number of reference genes in the category; O, the number of genes in the gene set and also in the category; E, expected number in the category; R, the ratio of enrichment, rawP, the p value from hypergeometric test (WebGestalt) or Fisher exact test (GATHER); adjP, the p value adjusted by the multiple test adjustment.
Please note that GATHER does not provide E and R.
Fig 2Clinical and genomic associations between LAD, AF type and AF recurrence.
Left atrial enlargement and persistent AF are associated with rhythm outcome of AF catheter ablation, but whether or not there are shared common genetic pathways is unknown. In this study, we found calcium signaling and ECM-receptor interaction pathways to be associated with left atrial diameter and persistent AF and, in turn, with AF recurrences.
Genes of the calcium signaling pathway associated with LAD and LRAF (in alphabetical order).
| Gene | Full name | LAD | LRAF |
|---|---|---|---|
| adenylate cyclase 2 | 1,8E-02 | 4,8E-02 | |
| adenylate cyclase 3 | 3,4E-02 | 2,6E-02 | |
| adenylate cyclase 8 | 1,4E-02 | 4,4E-02 | |
| adrenoceptor alpha 1A | 1,4E-02 | 3,1E-02 | |
| ATPase, Ca++ transporting, plasma membrane 2 | 8,3E-03 | 4,0E-02 | |
| bradykinin receptor B2 | 1,2E-02 | 2,3E-02 | |
| calcium channel, voltage-dependent, P/Q type, alpha 1A subunit | 3,0E-02 | 1,2E-02 | |
| calcium channel, voltage-dependent, N type, alpha 1B subunit | 4,2E-02 | 2,5E-02 | |
| calcium channel, voltage-dependent, L type, alpha 1C subunit | 7,8E-03 | 6,2E-03 | |
| calcium channel, voltage-dependent, L type, alpha 1D subunit | 7,6E-03 | 2,4E-02 | |
| calcium channel, voltage-dependent, R type, alpha 1E subunit | 8,7E-03 | 4,0E-03 | |
| calcium channel, voltage-dependent, T type, alpha 1H subunit | 3,8E-02 | 1,6E-02 | |
| calcium channel, voltage-dependent, L type, alpha 1S subunit | 2,5E-02 | 2,7E-02 | |
| calmodulin-like 3 | 4,8E-02 | 2,2E-02 | |
| calcium/calmodulin-dependent protein kinase II alpha | 1,6E-02 | 3,3E-02 | |
| calcium/calmodulin-dependent protein kinase IV | 6,3E-03 | 3,0E-04 | |
| cholinergic receptor, muscarinic 2 | 2,0E-02 | 4,4E-02 | |
| cholinergic receptor, muscarinic 3 | 1,9E-02 | 1,5E-02 | |
| CREB binding protein | 2,0E-02 | 1,5E-02 | |
| epidermal growth factor receptor | 5,0E-03 | 2,4E-02 | |
| v-erb-a erythroblastic leukemia viral oncogene homolog 4 | 2,3E-02 | 4,9E-02 | |
| guanine nucleotide binding protein, alpha 14 | 3,9E-02 | 1,9E-02 | |
| guanine nucleotide binding protein, alpha activating activity polypeptide, olfactory type | 7,9E-04 | 3,2E-02 | |
| guanine nucleotide binding protein, q polypeptide | 4,3E-02 | 4,9E-03 | |
| glutamate receptor, ionotropic, N-methyl D-aspartate 1 | 3,3E-02 | 9,3E-03 | |
| glutamate receptor, metabotropic 1 | 5,0E-02 | 4,2E-02 | |
| glutamate receptor, metabotropic 5 | 2,3E-02 | 1,9E-02 | |
| histamine receptor H2 | 1,6E-03 | 4,9E-02 | |
| 5-hydroxytryptamine receptor 2A, G protein-coupled | 4,9E-02 | 4,7E-02 | |
| inositol 1,4,5-trisphosphate receptor, type 1 | 3,5E-02 | 1,1E-02 | |
| inositol 1,4,5-trisphosphate receptor, type 2 | 1,9E-02 | 3,3E-02 | |
| inositol 1,4,5-trisphosphate receptor, type 3 | 8,4E-03 | 4,2E-02 | |
| luteinizing hormone/choriogonadotropin receptor | 1,6E-02 | 8,5E-03 | |
| nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 1 | 4,5E-02 | 8,7E-03 | |
| nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 2 | 3,9E-02 | 6,2E-03 | |
| purinergic receptor P2X, ligand-gated ion channel, 6 | 4,4E-02 | 2,7E-02 | |
| platelet-derived growth factor receptor, beta polypeptide | 1,2E-02 | 2,5E-02 | |
| phospholipase C, beta 1 | 2,1E-03 | 3,4E-02 | |
| phospholipase C, beta 4 | 4,4E-02 | 4,7E-02 | |
| phospholipase C, epsilon 1 | 2,3E-02 | 4,6E-02 | |
| phospholipase C, gamma 2 | 2,2E-02 | 7,5E-03 | |
| protein kinase C, alpha | 3,6E-02 | 4,8E-02 | |
| protein kinase C, beta | 4,4E-02 | 3,3E-02 | |
| prostaglandin E receptor 3 | 3,3E-02 | 4,2E-02 | |
| prostaglandin F receptor | 2,2E-02 | 5,0E-02 | |
| PTK2B protein tyrosine kinase 2 beta | 6,6E-03 | 1,9E-02 | |
| phosphorylase, glycogen, liver | 4,4E-02 | 3,6E-02 | |
| ryanodine receptor 1 | 4,7E-02 | 2,7E-02 | |
| ryanodine receptor 2 | 3,9E-02 | 4,1E-02 | |
| ryanodine receptor 3 | 2,0E-02 | 4,4E-02 | |
| solute carrier family 8, member 1 | 2,1E-02 | 3,0E-02 | |
| solute carrier family 8, member 3 | 3,0E-02 | 4,5E-02 | |
| spleen tyrosine kinase | 4,0E-03 | 4,1E-02 | |
| tachykinin receptor 3 | 4,8E-02 | 3,3E-02 | |
| titin | 1,5E-02 | 4,6E-02 |
Genes of the ECM-receptor interaction pathway associated with AF type and LRAF (in alphabetical order).
| Gene | Full name | AF type | LRAF |
|---|---|---|---|
| agrin | 1,2E-02 | 2,5E-02 | |
| CD36 antigen | 2,1E-02 | 5,3E-03 | |
| collagen, type IV, alpha 2 | 1,6E-02 | 8,7E-03 | |
| collagen, type IV, alpha 4 | 3,9E-02 | 3,4E-02 | |
| collagen, type V, alpha 1 | 3,7E-02 | 4,6E-03 | |
| collagen, type V, alpha 3 | 4,2E-02 | 2,0E-02 | |
| dystroglycan 1 | 9,3E-03 | 1,3E-02 | |
| fibronectin 1 | 4,2E-02 | 4,2E-02 | |
| heparan sulfate proteoglycan 2 | 4,9E-02 | 1,6E-02 | |
| integrin, alpha 1 | 4,7E-02 | 3,9E-02 | |
| integrin, alpha 4 | 2,2E-02 | 2,3E-02 | |
| integrin, alpha 9 | 1,9E-02 | 3,1E-03 | |
| integrin, beta 3 | 2,0E-02 | 2,6E-02 | |
| integrin, beta 4 | 3,7E-02 | 1,9E-02 | |
| integrin, beta 5 | 1,4E-02 | 4,0E-02 | |
| integrin, beta 6 | 3,4E-02 | 2,5E-02 | |
| laminin, alpha 1 | 2,2E-02 | 4,0E-02 | |
| laminin, alpha 3 | 4,5E-02 | 1,7E-02 | |
| laminin, alpha 5 | 1,3E-02 | 3,3E-02 | |
| laminin, gamma 3 | 3,6E-02 | 1,1E-02 | |
| reelin | 4,9E-02 | 3,7E-02 | |
| syndecan 2 | 3,5E-03 | 2,7E-02 | |
| synaptic vesicle glycoprotein 2B | 2,3E-02 | 1,5E-02 | |
| tenascin R | 4,7E-02 | 9,6E-03 | |
| tenascin XB | 2,7E-02 | 2,4E-02 | |
| von Willebrand factor | 4,9E-02 | 2,6E-02 |