Literature DB >> 27865394

Recent developments in genomics, bioinformatics and drug discovery to combat emerging drug-resistant tuberculosis.

Soumya Swaminathan1, Jagadish Chandrabose Sundaramurthi2, Alangudi Natarajan Palaniappan3, Sujatha Narayanan4.   

Abstract

Emergence of drug-resistant tuberculosis (DR-TB) is a big challenge in TB control. The delay in diagnosis of DR-TB leads to its increased transmission, and therefore prevalence. Recent developments in genomics have enabled whole genome sequencing (WGS) of Mycobacterium tuberculosis (M. tuberculosis) from 3-day-old liquid culture and directly from uncultured sputa, while new bioinformatics tools facilitate to determine DR mutations rapidly from the resulting sequences. The present drug discovery and development pipeline is filled with candidate drugs which have shown efficacy against DR-TB. Furthermore, some of the FDA-approved drugs are being evaluated for repurposing, and this approach appears promising as several drugs are reported to enhance efficacy of the standard TB drugs, reduce drug tolerance, or modulate the host immune response to control the growth of intracellular M. tuberculosis. Recent developments in genomics and bioinformatics along with new drug discovery collectively have the potential to result in synergistic impact leading to the development of a rapid protocol to determine the drug resistance profile of the infecting strain so as to provide personalized medicine. Hence, in this review, we discuss recent developments in WGS, bioinformatics and drug discovery to perceive how they would transform the management of tuberculosis in a timely manner.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Bioinformatics; Drug discovery; Drug-resistant tuberculosis; Personalized medicine; Whole genome sequencing

Mesh:

Substances:

Year:  2016        PMID: 27865394     DOI: 10.1016/j.tube.2016.08.002

Source DB:  PubMed          Journal:  Tuberculosis (Edinb)        ISSN: 1472-9792            Impact factor:   3.131


  9 in total

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Authors:  Vadim Makarov; Elena Salina; Robert C Reynolds; Phyo Phyo Kyaw Zin; Sean Ekins
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Review 2.  Genomic sequencing of Neisseria gonorrhoeae to respond to the urgent threat of antimicrobial-resistant gonorrhea.

Authors:  A Jeanine Abrams; David L Trees
Journal:  Pathog Dis       Date:  2017-06-01       Impact factor: 3.166

3.  Docking-based virtual screening of known drugs against murE of Mycobacterium tuberculosis towards repurposing for TB.

Authors:  Sridharan Brindha; Jagadish Chandrabose Sundaramurthi; Devadasan Velmurugan; Savariar Vincent; John Joel Gnanadoss
Journal:  Bioinformation       Date:  2016-11-22

4.  Comparison of line probe assay to BACTEC MGIT 960 system for susceptibility testing of first and second-line anti-tuberculosis drugs in a referral laboratory in South Africa.

Authors:  Nontuthuko E Maningi; Lesibana A Malinga; John F Antiabong; Ruth M Lekalakala; Nontombi M Mbelle
Journal:  BMC Infect Dis       Date:  2017-12-28       Impact factor: 3.090

Review 5.  Evolution of drug resistance in Mycobacterium tuberculosis: a review on the molecular determinants of resistance and implications for personalized care.

Authors:  Navisha Dookie; Santhuri Rambaran; Nesri Padayatchi; Sharana Mahomed; Kogieleum Naidoo
Journal:  J Antimicrob Chemother       Date:  2018-05-01       Impact factor: 5.790

6.  Comprehensive Analysis and Comparison on the Codon Usage Pattern of Whole Mycobacterium tuberculosis Coding Genome from Different Area.

Authors:  Li Gun; Ren Yumiao; Pan Haixian; Zhang Liang
Journal:  Biomed Res Int       Date:  2018-05-08       Impact factor: 3.411

7.  Development and evaluation of novel bio-safe filter paper-based kits for sputum microscopy and transport to directly detect Mycobacterium tuberculosis and associated drug resistance.

Authors:  Divya Anthwal; Surabhi Lavania; Rakesh Kumar Gupta; Ajoy Verma; Vithal Prasad Myneedu; Prem Prakash Sharma; Hitesh Verma; Viveksheel Malhotra; Ashawant Gupta; Nalini Kant Gupta; Rohit Sarin; Sagarika Haldar; Jaya Sivaswami Tyagi
Journal:  PLoS One       Date:  2019-08-13       Impact factor: 3.240

Review 8.  Bioinformatics Accelerates the Major Tetrad: A Real Boost for the Pharmaceutical Industry.

Authors:  Tapan Behl; Ishnoor Kaur; Aayush Sehgal; Sukhbir Singh; Saurabh Bhatia; Ahmed Al-Harrasi; Gokhan Zengin; Elena Emilia Babes; Ciprian Brisc; Manuela Stoicescu; Mirela Marioara Toma; Cristian Sava; Simona Gabriela Bungau
Journal:  Int J Mol Sci       Date:  2021-06-08       Impact factor: 5.923

9.  Direct detection of Mycobacterium tuberculosis rifampin resistance in bio-safe stained sputum smears.

Authors:  Surabhi Lavania; Divya Anthwal; Manpreet Bhalla; Nagendra Singh; Sagarika Haldar; Jaya Sivaswami Tyagi
Journal:  PLoS One       Date:  2017-12-07       Impact factor: 3.240

  9 in total

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