Literature DB >> 27865046

Functional Proteins from Short Peptides: Dayhoff's Hypothesis Turns 50.

M Luisa Romero Romero1, Avigayel Rabin2, Dan S Tawfik1.   

Abstract

First and foremost: Margaret Dayhoff's 1966 hypothesis on the origin of proteins is now an accepted model for the emergence of large, globular, functional proteins from short, simple peptides. However, the fundamental question of how the first protein(s) emerged still stands. The tools and hypotheses pioneered by Dayhoff, and the over 65 million protein sequences and 12 000 structures known today, enable those who follow in her footsteps to address this question.
© 2016 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Keywords:  Margaret O. Dayhoff; origin of life; peptides; protein evolution; proteins

Mesh:

Substances:

Year:  2016        PMID: 27865046     DOI: 10.1002/anie.201609977

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  17 in total

1.  Simple yet functional phosphate-loop proteins.

Authors:  Maria Luisa Romero Romero; Fan Yang; Yu-Ru Lin; Agnes Toth-Petroczy; Igor N Berezovsky; Alexander Goncearenco; Wen Yang; Alon Wellner; Fanindra Kumar-Deshmukh; Michal Sharon; David Baker; Gabriele Varani; Dan S Tawfik
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-30       Impact factor: 11.205

2.  De novo design of symmetric ferredoxins that shuttle electrons in vivo.

Authors:  Andrew C Mutter; Alexei M Tyryshkin; Ian J Campbell; Saroj Poudel; George N Bennett; Jonathan J Silberg; Vikas Nanda; Paul G Falkowski
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-01       Impact factor: 11.205

Review 3.  Conformational dynamics and enzyme evolution.

Authors:  Dušan Petrović; Valeria A Risso; Shina Caroline Lynn Kamerlin; Jose M Sanchez-Ruiz
Journal:  J R Soc Interface       Date:  2018-07       Impact factor: 4.118

4.  Small protein folds at the root of an ancient metabolic network.

Authors:  Hagai Raanan; Saroj Poudel; Douglas H Pike; Vikas Nanda; Paul G Falkowski
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-18       Impact factor: 11.205

5.  Short and simple sequences favored the emergence of N-helix phospho-ligand binding sites in the first enzymes.

Authors:  Liam M Longo; Dušan Petrović; Shina Caroline Lynn Kamerlin; Dan S Tawfik
Journal:  Proc Natl Acad Sci U S A       Date:  2020-02-20       Impact factor: 11.205

6.  Primordial emergence of a nucleic acid-binding protein via phase separation and statistical ornithine-to-arginine conversion.

Authors:  Liam M Longo; Dragana Despotović; Orit Weil-Ktorza; Matthew J Walker; Jagoda Jabłońska; Yael Fridmann-Sirkis; Gabriele Varani; Norman Metanis; Dan S Tawfik
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-19       Impact factor: 11.205

7.  Zinc-binding structure of a catalytic amyloid from solid-state NMR.

Authors:  Myungwoon Lee; Tuo Wang; Olga V Makhlynets; Yibing Wu; Nicholas F Polizzi; Haifan Wu; Pallavi M Gosavi; Jan Stöhr; Ivan V Korendovych; William F DeGrado; Mei Hong
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-31       Impact factor: 11.205

8.  Helicase-like functions in phosphate loop containing beta-alpha polypeptides.

Authors:  Pratik Vyas; Olena Trofimyuk; Liam M Longo; Fanindra Kumar Deshmukh; Michal Sharon; Dan S Tawfik
Journal:  Proc Natl Acad Sci U S A       Date:  2021-04-20       Impact factor: 11.205

Review 9.  The role of local versus nonlocal physicochemical restraints in determining protein native structure.

Authors:  Jeffrey Skolnick; Mu Gao
Journal:  Curr Opin Struct Biol       Date:  2020-10-28       Impact factor: 7.786

Review 10.  Infinite Assembly of Folded Proteins in Evolution, Disease, and Engineering.

Authors:  Hector Garcia-Seisdedos; José A Villegas; Emmanuel D Levy
Journal:  Angew Chem Int Ed Engl       Date:  2019-02-20       Impact factor: 15.336

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