Literature DB >> 27862402

A Simple Thermoplastic Substrate Containing Hierarchical Silica Lamellae for High-Molecular-Weight DNA Extraction.

Ye Zhang1, Yi Zhang1,2, Jeffrey M Burke3, Kristin Gleitsman4, Sarah M Friedrich1, Kelvin J Liu3, Tza-Huei Wang1,5,6,7.   

Abstract

An inexpensive, magnetic thermoplastic nanomaterial is developed utilizing a hierarchical layering of micro- and nanoscale silica lamellae to create a high-surface-area and low-shear substrate capable of capturing vast amounts of ultrahigh-molecular-weight DNA. Extraction is performed via a simple 45 min process and is capable of achieving binding capacities up to 1 000 000 times greater than silica microparticles.
© 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  high molecular weight; long read sequencing; nanoscale silica; solid-phase extraction; thermoplastic

Mesh：

Substances：

Year:  2016        PMID： 27862402      PMCID： PMC5234087          DOI： 10.1002/adma.201603738

Source DB:  PubMed          Journal:  Adv Mater        ISSN： 0935-9648            Impact factor:   30.849


  21 in total

1.  Evaluation of silica resins for direct and efficient extraction of DNA from complex biological matrices in a miniaturized format.

Authors:  H Tian; A F Hühmer; J P Landers
Journal:  Anal Biochem       Date:  2000-08-01       Impact factor: 3.365

2.  Preparation of megabase-sized DNA from a variety of organisms using the nuclei method for advanced genomics research.

Authors:  Meiping Zhang; Yang Zhang; Chantel F Scheuring; Cheng-Cang Wu; Jennifer J Dong; Hong-Bin Zhang
Journal:  Nat Protoc       Date:  2012-02-16       Impact factor: 13.491

3.  Nested self-similar wrinkling patterns in skins.

Authors:  Kirill Efimenko; Mindaugas Rackaitis; Evangelos Manias; Ashkan Vaziri; L Mahadevan; Jan Genzer
Journal:  Nat Mater       Date:  2005-04       Impact factor: 43.841

4.  Rapid and simple method for purification of nucleic acids.

Authors:  R Boom; C J Sol; M M Salimans; C L Jansen; P M Wertheim-van Dillen; J van der Noordaa
Journal:  J Clin Microbiol       Date:  1990-03       Impact factor: 5.948

Review 5.  One chromosome, one contig: complete microbial genomes from long-read sequencing and assembly.

Authors:  Sergey Koren; Adam M Phillippy
Journal:  Curr Opin Microbiol       Date:  2014-12-01       Impact factor: 7.934

6.  Single Molecule Hydrodynamic Separation Allows Sensitive and Quantitative Analysis of DNA Conformation and Binding Interactions in Free Solution.

Authors:  Sarah M Friedrich; Kelvin J Liu; Tza-Huei Wang
Journal:  J Am Chem Soc       Date:  2015-12-31       Impact factor: 15.419

7.  Single-molecule analysis enables free solution hydrodynamic separation using yoctomole levels of DNA.

Authors:  Kelvin J Liu; Tushar D Rane; Yi Zhang; Tza-Huei Wang
Journal:  J Am Chem Soc       Date:  2011-04-19       Impact factor: 15.419

8.  Adsorption behaviors of DNA/cation complexes on amino and silica chip surfaces: a dual polarization interferometry study.

Authors:  Fujian Huang; Haojun Liang
Journal:  ACS Appl Mater Interfaces       Date:  2013-06-03       Impact factor: 9.229

9.  A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers.

Authors:  Michael A Quail; Miriam Smith; Paul Coupland; Thomas D Otto; Simon R Harris; Thomas R Connor; Anna Bertoni; Harold P Swerdlow; Yong Gu
Journal:  BMC Genomics       Date:  2012-07-24       Impact factor: 3.969

10.  The advantages of SMRT sequencing.

Authors:  Richard J Roberts; Mauricio O Carneiro; Michael C Schatz
Journal:  Genome Biol       Date:  2013-07-03       Impact factor: 13.583
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Authors:  James H Tryon; Jennifer C Rote; Li Chen; Matthew T Robey; Marvin M Vega; Wan Cheng Phua; William W Metcalf; Kou-San Ju; Neil L Kelleher; Regan J Thomson
Journal:  ACS Chem Biol       Date:  2020-11-05       Impact factor: 5.100

2.  Charge-Dependent Regulation in DNA Adsorption on 2D Clay Minerals.

Authors:  Hongyi Xie; Zhengqing Wan; Song Liu; Yi Zhang; Jieqiong Tan; Huaming Yang
Journal:  Sci Rep       Date:  2019-05-02       Impact factor: 4.379

3.  A Reference Genome Sequence for Giant Sequoia.

Authors:  Alison D Scott; Aleksey V Zimin; Daniela Puiu; Rachael Workman; Monica Britton; Sumaira Zaman; Madison Caballero; Andrew C Read; Adam J Bogdanove; Emily Burns; Jill Wegrzyn; Winston Timp; Steven L Salzberg; David B Neale
Journal:  G3 (Bethesda)       Date:  2020-11-05       Impact factor: 3.154

4.  Consistent ultra-long DNA sequencing with automated slow pipetting.

Authors:  Trent M Prall; Emma K Neumann; Julie A Karl; Cecilia G Shortreed; David A Baker; Hailey E Bussan; Roger W Wiseman; David H O'Connor
Journal:  BMC Genomics       Date:  2021-03-12       Impact factor: 3.969

5.  Benchmarking ultra-high molecular weight DNA preservation methods for long-read and long-range sequencing.

Authors:  Hollis A Dahn; Jacquelyn Mountcastle; Jennifer Balacco; Sylke Winkler; Iliana Bista; Anthony D Schmitt; Olga Vinnere Pettersson; Giulio Formenti; Karen Oliver; Michelle Smith; Wenhua Tan; Anne Kraus; Stephen Mac; Lisa M Komoroske; Tanya Lama; Andrew J Crawford; Robert W Murphy; Samara Brown; Alan F Scott; Phillip A Morin; Erich D Jarvis; Olivier Fedrigo
Journal:  Gigascience       Date:  2022-08-10       Impact factor: 7.658
  5 in total

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