Literature DB >> 27860024

Capturing Excited States in the Fast-Intermediate Exchange Limit in Biological Systems Using 1 H NMR Spectroscopy.

Emilie Steiner1, Judith Schlagnitweit1, Patrik Lundström2, Katja Petzold1.   

Abstract

Changes in molecular structure are essential for the function of biomolecules. Characterization of these structural fluctuations can illuminate alternative states and help in correlating structure to function. NMR relaxation dispersion (RD) is currently the only method for detecting these alternative, high-energy states. In this study, we present a versatile 1 H R1ρ RD experiment that not only extends the exchange timescales at least three times beyond the rate limits of 13 C/15 N R1ρ and ten times for CPMG experiments, but also makes use of easily accessible probes, thus allowing a general description of biologically important excited states. This technique can be used to extract chemical shifts for the structural characterization of excited states and to elucidate complex excited states.
© 2016 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Keywords:  1H NMR spectroscopy; biomolecular dynamics; excited states; nucleic acids; relaxation dispersion

Year:  2016        PMID: 27860024     DOI: 10.1002/anie.201609102

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  9 in total

Review 1.  Characterizing micro-to-millisecond chemical exchange in nucleic acids using off-resonance R relaxation dispersion.

Authors:  Atul Rangadurai; Eric S Szymaski; Isaac J Kimsey; Honglue Shi; Hashim M Al-Hashimi
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2019-05-11       Impact factor: 9.795

2.  Dynamic ensemble of HIV-1 RRE stem IIB reveals non-native conformations that disrupt the Rev-binding site.

Authors:  Chia-Chieh Chu; Raphael Plangger; Christoph Kreutz; Hashim M Al-Hashimi
Journal:  Nucleic Acids Res       Date:  2019-07-26       Impact factor: 16.971

3.  Probing excited conformational states of nucleic acids by nitrogen CEST NMR spectroscopy.

Authors:  Bo Zhao; Jared T Baisden; Qi Zhang
Journal:  J Magn Reson       Date:  2019-11-11       Impact factor: 2.229

4.  Efficient Detection of Structure and Dynamics in Unlabeled RNAs: The SELOPE Approach.

Authors:  Judith Schlagnitweit; Emilie Steiner; Hampus Karlsson; Katja Petzold
Journal:  Chemistry       Date:  2018-03-25       Impact factor: 5.236

5.  A robust and versatile method for production and purification of large-scale RNA samples for structural biology.

Authors:  Hampus Karlsson; Lorenzo Baronti; Katja Petzold
Journal:  RNA       Date:  2020-04-30       Impact factor: 4.942

Review 6.  RNA Dynamics by NMR Spectroscopy.

Authors:  Maja Marušič; Judith Schlagnitweit; Katja Petzold
Journal:  Chembiochem       Date:  2019-07-17       Impact factor: 3.164

7.  1H R relaxation dispersion experiments in aromatic side chains.

Authors:  Matthias Dreydoppel; Roman J Lichtenecker; Mikael Akke; Ulrich Weininger
Journal:  J Biomol NMR       Date:  2021-09-12       Impact factor: 2.835

Review 8.  Isotope Labels Combined with Solution NMR Spectroscopy Make Visible the Invisible Conformations of Small-to-Large RNAs.

Authors:  Theodore K Dayie; Lukasz T Olenginski; Kehinde M Taiwo
Journal:  Chem Rev       Date:  2022-04-20       Impact factor: 72.087

9.  A suite of 19F based relaxation dispersion experiments to assess biomolecular motions.

Authors:  Jan H Overbeck; Werner Kremer; Remco Sprangers
Journal:  J Biomol NMR       Date:  2020-09-30       Impact factor: 2.835

  9 in total

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