Literature DB >> 27859392

Developing multisite empirical force field models for Pt(II) and cisplatin.

John P Cvitkovic1, George A Kaminski1.   

Abstract

We have developed empirical force field parameters for Pt(II) and cisplatin. Two force field frameworks were used-modified OPLS-AA and our second-order polarizable POSSIM. A seven-site model was used for the Pt(II) ion. The goal was to create transferable parameter sets compatible with the force field models for proteins and general organic compounds. A number of properties of the Pt(II) ion and its coordination compounds have been considered, including geometries and energies of the complexes, hydration free energy, and radial distribution functions in water. Comparison has been made with experimental and quantum mechanical results. We have demonstrated that both versions are generally capable of reproducing key properties of the system, but the second-order polarizable POSSIM formalism permits more accurate quantitative results to be obtained. For example, the energy of formation of cisplatin as calculated with the modified OPLS-AA exhibited an error of 9.9%, while the POSSIM error for the same quantity was 6.2%. The produced parameter sets are transferable and suitable to be used in protein-metal binding simulations in which position or even coordination of the ion does not have to be constrained using preexisting knowledge.
© 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.

Entities:  

Keywords:  OPLS-AA; POSSIM; Pt(II); cisplatin; empirical force fields; polarizable force field

Mesh:

Substances:

Year:  2016        PMID: 27859392      PMCID: PMC5140683          DOI: 10.1002/jcc.24665

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  30 in total

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Review 5.  Mechanism of tumor resistance to cisplatin mediated by the copper transporter ATP7B.

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6.  The role of the basis set and the level of quantum mechanical theory in the prediction of the structure and reactivity of cisplatin.

Authors:  Diego Paschoal; Bruna L Marcial; Juliana Fedoce Lopes; Wagner B De Almeida; Hélio F Dos Santos
Journal:  J Comput Chem       Date:  2012-07-10       Impact factor: 3.376

7.  Polarizable simulations with second order interaction model (POSSIM) force field: developing parameters for protein side-chain analogues.

Authors:  Xinbi Li; Sergei Y Ponomarev; Qina Sa; Daniel L Sigalovsky; George A Kaminski
Journal:  J Comput Chem       Date:  2013-02-19       Impact factor: 3.376

8.  Reproducing basic pKa values for turkey ovomucoid third domain using a polarizable force field.

Authors:  Timothy H Click; George A Kaminski
Journal:  J Phys Chem B       Date:  2009-06-04       Impact factor: 2.991

9.  Structure of the hydrated platinum(II) ion and the cis-diammineplatinum(II) complex in acidic aqueous solution: an EXAFS study.

Authors:  Farideh Jalilehvand; Luke J Laffin
Journal:  Inorg Chem       Date:  2008-03-04       Impact factor: 5.165

10.  Electrostatic polarization is crucial for reproducing pKa shifts of carboxylic residues in Turkey ovomucoid third domain.

Authors:  Christopher M Macdermaid; George A Kaminski
Journal:  J Phys Chem B       Date:  2007-06-28       Impact factor: 2.991

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