Literature DB >> 27858339

Recent advances and challenges in the heterologous production of microbial nitrilases for biocatalytic applications.

Ludmila Martínková1, Lenka Rucká2, Jan Nešvera2, Miroslav Pátek2.   

Abstract

The aim of this study is to review the current state of and highlight the challenges in the production of microbial nitrilases as catalysts for the mild hydrolysis of industrially important nitriles. Together with aldoxime dehydratase, the nitrile-hydrolyzing enzymes (nitrilase, nitrile hydratase) are key enzymes in the aldoxime-nitrile pathway which is widely distributed in bacteria and fungi. The availability of nitrilases has grown significantly over the past decade due to the use of metagenomic and database-mining approaches. Databases contain plenty of putative enzymes of this type, whose overproduction may improve the spectrum and the industrial utility of nitrilases. By exploiting this resource, the number of experimentally verified nitrilases has recently increased to several hundred. We especially focus on the efficient heterologous expression systems that are applicable for the overproduction of wild-type nitrilases and their artificial variants. Biocatalyst forms with industrial potential are also highlighted. The potential industrial applications of nitrilases are classified according to their target products (α-hydroxy acids, α- and β-amino acids, cyano acids, amides). The emerging uses of nitrilases and their subtypes (cyanide hydratases, cyanide dihydratases) in bioremediation is also summarized. The integration of nitrilases with other enzymes into artificial multienzymatic and chemoenzymatic pathways is considered a promising strategy for future applications.

Entities:  

Keywords:  Aldoxime–nitrile pathway; Biocatalytic applications; Database mining; Heterologous production; Metagenome mining; Nitrilase

Mesh:

Substances:

Year:  2016        PMID: 27858339     DOI: 10.1007/s11274-016-2173-6

Source DB:  PubMed          Journal:  World J Microbiol Biotechnol        ISSN: 0959-3993            Impact factor:   3.312


  42 in total

1.  Distribution of aldoxime dehydratase in microorganisms.

Authors:  Y Kato; R Ooi; Y Asano
Journal:  Appl Environ Microbiol       Date:  2000-06       Impact factor: 4.792

2.  Nitrilase from Pseudomonas fluorescens EBC191: cloning and heterologous expression of the gene and biochemical characterization of the recombinant enzyme.

Authors:  Christoph Kiziak; Doris Conradt; Andreas Stolz; Ralf Mattes; Joachim Klein
Journal:  Microbiology       Date:  2005-11       Impact factor: 2.777

3.  Purification and characterization of heterologously expressed nitrilases from filamentous fungi.

Authors:  Alena Petříčková; Alicja Barbara Veselá; Ondřej Kaplan; David Kubáč; Bronislava Uhnáková; Anna Malandra; Jürgen Felsberg; Anna Rinágelová; Philip Weyrauch; Vladimír Křen; Karel Bezouška; Ludmila Martínková
Journal:  Appl Microbiol Biotechnol       Date:  2011-09-03       Impact factor: 4.813

4.  Exploring nitrilase sequence space for enantioselective catalysis.

Authors:  Dan E Robertson; Jennifer A Chaplin; Grace DeSantis; Mircea Podar; Mark Madden; Ellen Chi; Toby Richardson; Aileen Milan; Mark Miller; David P Weiner; Kelvin Wong; Jeff McQuaid; Bob Farwell; Lori A Preston; Xuqiu Tan; Marjory A Snead; Martin Keller; Eric Mathur; Patricia L Kretz; Mark J Burk; Jay M Short
Journal:  Appl Environ Microbiol       Date:  2004-04       Impact factor: 4.792

Review 5.  Biodegradation potential of the genus Rhodococcus.

Authors:  Ludmila Martínková; Bronislava Uhnáková; Miroslav Pátek; Jan Nesvera; Vladimír Kren
Journal:  Environ Int       Date:  2008-09-11       Impact factor: 9.621

6.  Genome mining of cyanide-degrading nitrilases from filamentous fungi.

Authors:  Lacy J Basile; Richard C Willson; B Trevor Sewell; Michael J Benedik
Journal:  Appl Microbiol Biotechnol       Date:  2008-06-28       Impact factor: 4.813

7.  Investigative mining of sequence data for novel enzymes: a case study with nitrilases.

Authors:  Jennifer L Seffernick; Sudip K Samanta; Tai Man Louie; Lawrence P Wackett; Mani Subramanian
Journal:  J Biotechnol       Date:  2009-06-17       Impact factor: 3.307

8.  Red Sea Atlantis II brine pool nitrilase with unique thermostability profile and heavy metal tolerance.

Authors:  Sarah A Sonbol; Ari J S Ferreira; Rania Siam
Journal:  BMC Biotechnol       Date:  2016-02-11       Impact factor: 2.563

Review 9.  Nitrilases in nitrile biocatalysis: recent progress and forthcoming research.

Authors:  Jin-Song Gong; Zhen-Ming Lu; Heng Li; Jin-Song Shi; Zhe-Min Zhou; Zheng-Hong Xu
Journal:  Microb Cell Fact       Date:  2012-10-30       Impact factor: 5.328

10.  Fungal His-tagged nitrilase from Gibberella intermedia: gene cloning, heterologous expression and biochemical properties.

Authors:  Jin-Song Gong; Heng Li; Xiao-Yan Zhu; Zhen-Ming Lu; Yan Wu; Jing-Song Shi; Zheng-Hong Xu
Journal:  PLoS One       Date:  2012-11-30       Impact factor: 3.240

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  9 in total

1.  Cloning, overexpression, and characterization of a thermostable nitrilase from an Antarctic Pyrococcus sp.

Authors:  Ma Ángeles Cabrera; Jenny M Blamey
Journal:  Extremophiles       Date:  2017-07-25       Impact factor: 2.395

2.  Biodegradation of nitriles derived from glucosinolates in rapeseed meal by BnNIT2: a nitrilase from Brassica napus with wide substrate specificity.

Authors:  Heng Zhang; Honghai Zhang; Xing Qin; Xiaolu Wang; Yuan Wang; Tao Tu; Yaru Wang; Bin Yao; Huoqing Huang; Huiying Luo
Journal:  Appl Microbiol Biotechnol       Date:  2022-03-09       Impact factor: 4.813

3.  Effects of Reduced and Enhanced Glycogen Pools on Salt-Induced Sucrose Production in a Sucrose-Secreting Strain of Synechococcus elongatus PCC 7942.

Authors:  Cuncun Qiao; Yangkai Duan; Mingyi Zhang; Martin Hagemann; Quan Luo; Xuefeng Lu
Journal:  Appl Environ Microbiol       Date:  2018-01-02       Impact factor: 4.792

4.  Cryo-EM and directed evolution reveal how Arabidopsis nitrilase specificity is influenced by its quaternary structure.

Authors:  Andani E Mulelu; Angela M Kirykowicz; Jeremy D Woodward
Journal:  Commun Biol       Date:  2019-07-17

Review 5.  Comparative Analysis of the Conversion of Mandelonitrile and 2-Phenylpropionitrile by a Large Set of Variants Generated from a Nitrilase Originating from Pseudomonas fluorescens EBC191.

Authors:  Andreas Stolz; Erik Eppinger; Olga Sosedov; Christoph Kiziak
Journal:  Molecules       Date:  2019-11-21       Impact factor: 4.411

6.  The use of clade-specific PCR assays to identify novel nitrilase genes from environmental isolates.

Authors:  Tríona-Marie Dooley-Cullinane; Catherine O'Reilly; Bilal Aslam; David P Weiner; David O'Neill; Erica Owens; Denise O'Meara; Lee Coffey
Journal:  Microbiologyopen       Date:  2018-12-30       Impact factor: 3.139

7.  Genetic and Functional Diversity of Nitrilases in Agaricomycotina.

Authors:  Lenka Rucká; Martin Chmátal; Natalia Kulik; Lucie Petrásková; Helena Pelantová; Petr Novotný; Romana Příhodová; Miroslav Pátek; Ludmila Martínková
Journal:  Int J Mol Sci       Date:  2019-11-28       Impact factor: 5.923

8.  Plant Nitrilase Homologues in Fungi: Phylogenetic and Functional Analysis with Focus on Nitrilases in Trametes versicolor and Agaricus bisporus.

Authors:  Lenka Rucká; Natalia Kulik; Petr Novotný; Anastasia Sedova; Lucie Petrásková; Romana Příhodová; Barbora Křístková; Petr Halada; Miroslav Pátek; Ludmila Martínková
Journal:  Molecules       Date:  2020-08-25       Impact factor: 4.411

Review 9.  Metabolism of Aldoximes and Nitriles in Plant-Associated Bacteria and Its Potential in Plant-Bacteria Interactions.

Authors:  Robert Rädisch; Miroslav Pátek; Barbora Křístková; Margit Winkler; Vladimír Křen; Ludmila Martínková
Journal:  Microorganisms       Date:  2022-03-02
  9 in total

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