Literature DB >> 27856785

Chronic obstructive pulmonary disease phenotypes using cluster analysis of electronic medical records.

Rodrigo Vazquez Guillamet1, Oleg Ursu1, Gary Iwamoto1, Pope L Moseley1, Tudor Oprea1.   

Abstract

Chronic obstructive pulmonary disease is a heterogeneous disease. In this retrospective study, we hypothesize that it is possible to identify clinically relevant phenotypes by applying clustering methods to electronic medical records. We included all the patients >40 years with a diagnosis of chronic obstructive pulmonary disease admitted to the University of New Mexico Hospital between 1 January 2011 and 1 May 2014. We collected admissions, demographics, comorbidities, severity markers and treatments. A total of 3144 patients met the inclusion criteria: 46 percent were >65 years and 52 percent were males. The median Charlson score was 2 (interquartile range: 1-4) and the most frequent comorbidities were depression (36%), congestive heart failure (25%), obesity (19%), cancer (19%) and mild liver disease (18%). Using the sphere exclusion method, nine clusters were obtained: depression-chronic obstructive pulmonary disease, coronary artery disease-chronic obstructive pulmonary disease, cerebrovascular disease-chronic obstructive pulmonary disease, malignancy-chronic obstructive pulmonary disease, advanced malignancy-chronic obstructive pulmonary disease, diabetes mellitus-chronic kidney disease-chronic obstructive pulmonary disease, young age-few comorbidities-high readmission rates-chronic obstructive pulmonary disease, atopy-chronic obstructive pulmonary disease, and advanced disease-chronic obstructive pulmonary disease. These clusters will need to be validated prospectively.

Entities:  

Keywords:  asthma; chronic obstructive pulmonary disease; comorbidity; epidemiology; factor analysis; phenotype

Mesh:

Year:  2016        PMID: 27856785     DOI: 10.1177/1460458216675661

Source DB:  PubMed          Journal:  Health Informatics J        ISSN: 1460-4582            Impact factor:   2.681


  7 in total

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Journal:  Chem Soc Rev       Date:  2020-05-01       Impact factor: 54.564

2.  Identifying clinically important COPD sub-types using data-driven approaches in primary care population based electronic health records.

Authors:  Maria Pikoula; Jennifer Kathleen Quint; Francis Nissen; Harry Hemingway; Liam Smeeth; Spiros Denaxas
Journal:  BMC Med Inform Decis Mak       Date:  2019-04-18       Impact factor: 2.796

3.  Multiscale classification of heart failure phenotypes by unsupervised clustering of unstructured electronic medical record data.

Authors:  Tasha Nagamine; Brian Gillette; Alexey Pakhomov; John Kahoun; Hannah Mayer; Rolf Burghaus; Jörg Lippert; Mayur Saxena
Journal:  Sci Rep       Date:  2020-12-07       Impact factor: 4.379

4.  Neurological and Psychiatric Comorbidities in Chronic Obstructive Pulmonary Disease.

Authors:  Kristijonas Puteikis; Rūta Mameniškienė; Elena Jurevičienė
Journal:  Int J Chron Obstruct Pulmon Dis       Date:  2021-03-03

5.  Computational phenotyping of obstructive airway diseases: protocol for a systematic review.

Authors:  Muwada Bashir Awad Bashir; Rani Basna; Guo-Qiang Zhang; Helena Backman; Anne Lindberg; Linda Ekerljung; Malin Axelsson; Linnea Hedman; Lowie Vanfleteren; Bo Lundbäck; Eva Rönmark; Bright I Nwaru
Journal:  Syst Rev       Date:  2022-10-13

6.  Characterisation, identification, clustering, and classification of disease.

Authors:  A J Webster; K Gaitskell; I Turnbull; B J Cairns; R Clarke
Journal:  Sci Rep       Date:  2021-03-08       Impact factor: 4.379

Review 7.  Identifying COPD in routinely collected electronic health records: a systematic scoping review.

Authors:  Shanya Sivakumaran; Mohammad A Alsallakh; Ronan A Lyons; Jennifer K Quint; Gwyneth A Davies
Journal:  ERJ Open Res       Date:  2021-09-13
  7 in total

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