Literature DB >> 27856379

Templates as a method for implementing data provenance in decision support systems.

Vasa Curcin1, Elliot Fairweather2, Roxana Danger3, Derek Corrigan4.   

Abstract

Decision support systems are used as a method of promoting consistent guideline-based diagnosis supporting clinical reasoning at point of care. However, despite the availability of numerous commercial products, the wider acceptance of these systems has been hampered by concerns about diagnostic performance and a perceived lack of transparency in the process of generating clinical recommendations. This resonates with the Learning Health System paradigm that promotes data-driven medicine relying on routine data capture and transformation, which also stresses the need for trust in an evidence-based system. Data provenance is a way of automatically capturing the trace of a research task and its resulting data, thereby facilitating trust and the principles of reproducible research. While computational domains have started to embrace this technology through provenance-enabled execution middlewares, traditionally non-computational disciplines, such as medical research, that do not rely on a single software platform, are still struggling with its adoption. In order to address these issues, we introduce provenance templates - abstract provenance fragments representing meaningful domain actions. Templates can be used to generate a model-driven service interface for domain software tools to routinely capture the provenance of their data and tasks. This paper specifies the requirements for a Decision Support tool based on the Learning Health System, introduces the theoretical model for provenance templates and demonstrates the resulting architecture. Our methods were tested and validated on the provenance infrastructure for a Diagnostic Decision Support System that was developed as part of the EU FP7 TRANSFoRm project.
Copyright © 2016 The Author(s). Published by Elsevier Inc. All rights reserved.

Keywords:  D2.1 (Software Engineering) Requirements/specification J.3 (Life and Medical Sciences): Health data provenance; Decision support systems; Model-driven architectures

Mesh:

Year:  2016        PMID: 27856379     DOI: 10.1016/j.jbi.2016.10.022

Source DB:  PubMed          Journal:  J Biomed Inform        ISSN: 1532-0464            Impact factor:   6.317


  7 in total

1.  Do Novice and Expert Users of Clinical Decision Support Tools Need Different Explanations?

Authors:  Haadi Mombini; Bengisu Tulu; Diane Strong; Emmanuel Agu; Clifford Lindsay; Lorraine Loretz; Peder Pedersen; Raymond Dunn
Journal:  Proc Am Conf Inf Syst       Date:  2020-08

2.  Application of Data Provenance in Healthcare Analytics Software: Information Visualisation of User Activities.

Authors:  Shen Xu; Toby Rogers; Elliot Fairweather; Anthony Glenn; James Curran; Vasa Curcin
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2018-05-18

3.  Requirements and validation of a prototype learning health system for clinical diagnosis.

Authors:  Derek Corrigan; Gary Munnelly; Przemysław Kazienko; Tomasz Kajdanowicz; Jean-Karl Soler; Samhar Mahmoud; Talya Porat; Olga Kostopoulou; Vasa Curcin; Brendan Delaney
Journal:  Learn Health Syst       Date:  2017-05-31

4.  Evaluation of a clinical decision support system for rare diseases: a qualitative study.

Authors:  Jannik Schaaf; Martin Sedlmayr; Brita Sedlmayr; Hans-Ulrich Prokosch; Holger Storf
Journal:  BMC Med Inform Decis Mak       Date:  2021-02-18       Impact factor: 2.796

5.  Lightweight Distributed Provenance Model for Complex Real-world Environments.

Authors:  Rudolf Wittner; Cecilia Mascia; Matej Gallo; Francesca Frexia; Heimo Müller; Markus Plass; Jörg Geiger; Petr Holub
Journal:  Sci Data       Date:  2022-08-17       Impact factor: 8.501

6.  Desiderata for the development of next-generation electronic health record phenotype libraries.

Authors:  Martin Chapman; Shahzad Mumtaz; Luke V Rasmussen; Andreas Karwath; Georgios V Gkoutos; Chuang Gao; Dan Thayer; Jennifer A Pacheco; Helen Parkinson; Rachel L Richesson; Emily Jefferson; Spiros Denaxas; Vasa Curcin
Journal:  Gigascience       Date:  2021-09-11       Impact factor: 6.524

7.  Structure-based knowledge acquisition from electronic lab notebooks for research data provenance documentation.

Authors:  Max Schröder; Susanne Staehlke; Paul Groth; J Barbara Nebe; Sascha Spors; Frank Krüger
Journal:  J Biomed Semantics       Date:  2022-01-31
  7 in total

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