| Literature DB >> 27854318 |
Er-Kai Yan1, Chen-Yan Zhang2, Jin He3, Da-Chuan Yin4.
Abstract
Protein crystallization under a magnetic field is an interesting research topic because a magnetic field may provide a special environment to acquire improved quality protein crystals. Because high-quality protein crystals are very useful in high-resolution structure determination using diffraction techniques (X-ray, neutron, and electron diffraction), research using magnetic fields in protein crystallization has attracted substantial interest; some studies have been performed in the past two decades. In this research field, the hardware is especially essential for successful studies because the environment is special and the design and utilization of the research apparatus in such an environment requires special considerations related to the magnetic field. This paper reviews the hardware for protein crystallization (including the magnet systems and the apparatus designed for use in a magnetic field) and progress in this area. Future prospects in this field will also be discussed.Entities:
Keywords: apparatus; magnetic field; protein crystallization; superconducting magnet
Mesh:
Substances:
Year: 2016 PMID: 27854318 PMCID: PMC5133904 DOI: 10.3390/ijms17111906
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Different magnets used for protein crystallization.
| Magnets | Flux Density (T) | Features | References |
|---|---|---|---|
| Electromagnets | 0–2.4 | Low cost; continuous function in the range of hours | [ |
| Permanent magnets | 0.1–1.25 | Negligible cost; prolonged durability | [ |
| Hybrid magnets (resistive magnets) | 33–45 | Large power consumption; continuous function in the range of hours | [ |
| Superconducting magnets | 4–16.1 | Low running cost; sustainable working state for years | [ |
Figure 1Experimental setup utilized to observe the orientation of crystal boards: (a) horizontal magnetic field generated by an electromagnet; and (b) vertical magnetic field generated by a permanent magnet [15]. Reproduced from reference [15] with permission from the Japan Society of Applied Physics.
Superconducting magnets used for protein crystallization.
| Magnets | Intensity (T) | Manufacturer | Types of Protein | References |
|---|---|---|---|---|
| Liquid-helium-free superconducting magnet | 11 | Institute for Materials Research, Tohoku University | Lysozyme, horse spleen ferritin | [ |
| Cryogen-free superconducting magnet | 8 | Sumitomo Heavy Industry | Lysozyme microcrystals | [ |
| Cryogen-free superconducting magnet | 12 | OXFORD Instruments, UK (Abingdon, UK) | Lysozyme | [ |
| Low-temperature superconducting magnet | 5 | Japan Magnet Technology, Inc. (Kobe, Japan) | [ | |
| Liquid-helium-free superconducting magnet | 10 | Japan Magnet Technology, Inc. | Human estrogenic 17 β-hydroxysteroid dehydrogenase, lysozyme snake muscle fructose-1,6-bisphosphatase, bovine adenosine deaminase | [ |
| Low-temperature superconducting magnet | 16.12 | Japan Superconductor Technology, Inc. (Hyogo, Japan) | Lysozyme, light-harvesting complex 2, protein K, concanavalin, HSP90N thaumatin, catalase, trichosanthin | [ |
| Laboratory-size superconducting magnet | 15 | Japan Superconductor Technology, Inc. | Lysozyme, acylphosphatase, nucleoside diphosphate kinase, ST0811, monomeric sarcosine oxidase, flap endonuclease 1 | [ |
Figure 2Setup used for high-throughput crystallization: (a) the front view of the transverse magnet; and (b) the magnetic flux density over ±70 mm at full field.
Figure 3Schematic diagram of the superconducting magnet (JMTA-16T, JASTEC, Inc.) now installed at Northwestern Polytechnical University, Xi’an, China [11].
Figure 4Distribution diagram of the gravitational force and Lorentz force of an object inside the superconducting magnet (JMTA-16T). Positions A, C, and B correspond to µg, 1 g and 2 g, respectively [11].
A resolution comparison of crystals grown inside and outside of the magnetic field.
| Protein | Resolution (Å) | Resolution (Å) | Best Resolution (Å) | Magnetic Field Intensity (T) | Types of Diffractometers | References |
|---|---|---|---|---|---|---|
| Lysozyme | 1.3 | 1.13 | 0.65 | 10 | Rigaku AFC5 four-circle diffractometer | [ |
| Bovine adenosine deaminase crystals | 2.5 | 2.0 | 1.52 | 10 | Rigaku rotating-anode generator | [ |
| Lysozyme | 1.33 | 1.13 | 0.65 | 10 | BL18B at the Photon Factory, Tsukuba, Japan | [ |
| Fru-1,6-Pase crystals | 3.15 | 2.9 | 6 (upper) | Rigaku rotating-anode generator | [ | |
| 2.9 | 2.1 | 10 (middle) | ||||
| 6 | 3.9 (lower) | |||||
| Lysozyme | 1.20 | 0.95 | 0.65 | 12 | Macromolecular Crystallography Beamline (BL17U1) at the SSRF | [ |
| Protease K | 1.14 | 0.95 | 0.98 | |||
| Trichosanthin | 1.07 | 1.12 | 1.6 | |||
| Concanavalin A | 1.78 | 1.23 | 0.94 | |||
| Thaumatin | 2.70 | 1.35 | 0.94 | |||
| Catalase | 4.64 | 2.28 | 0.88 | |||
| Heat shock protein90N | 2.89 | 1.61 | 1.2 | |||
| ST0811 | 1.59 | 1.10 | 2.0 | 8–11 | Synchrotron beamlines (SPring-8 or Photon Hyogo, Japan) | [ |
| Nucleoside diphosphate kinase | 2.61 | 2.16 | 1.25 | |||
| Flap endonuclease 1 | 1.90 | 1.85 | 1.88 | |||
| Pyrococcus horikoshii OT3 | 1.70 | 1.50 | 1.2 | |||
| Monomeric sarcosine oxidase | 2.70 | 1.95 | 1.6 |
Figure 5Schematic illustration of the experimental device used in permanent magnets [7].
Figure 6Schematic diagram of the symmetrical device for simultaneously observing protein crystal growth in two locations [51].
Figure 7Schematic drawing of the Schlieren microscope in a magnetic field [52].
Figure 8Schematic illustration of a container-less levitation device assembled in a superconducting magnet [44]. (a) The containerless levitation setup; (b) the levitation unit. Reproduced from reference [44] with permission from AIP Publishing LLC and Copyright Clearance Center.
Figure 9Schematic drawing of the experimental device for protein crystallization in gels. The gels were placed within capillary tubes located inside NMR tubes in magnetic fields [45].
Figure 10(a) Schematic drawing of the Mach–Zehnder interferometer in a superconducting magnet bore; and (b) sample holder and enlarged drawing of a sample cell [56]. Reproduced from reference [56] with permission from Elsevier and Copyright Clearance Center.
Figure 11Schematic drawing of the apparatus for measuring viscosity in a superconducting magnet [58].
Figure 12Schematic illustration of the experimental setup for the real-time observation of solution convection [60].
Figure 13Schematic diagram of the high-throughput crystallization screening setup [26]. (a) The high-throughput crystallization setup using in the magnet; (b) the reservoir base; (c) the structure details of the high-throughput crystallization setup. Reproduced from reference [26] with permission from the PCCP owner societies.