| Literature DB >> 27846228 |
Wei-Chang Yeh1, Yunzhi Jiang2, Yee-Fen Chen3, Zhe Chen4.
Abstract
The K-harmonic means clustering algorithm (KHM) is a new clustering method used to group data such that the sum of the harmonic averages of the distances between each entity and all cluster centroids is minimized. Because it is less sensitive to initialization than K-means (KM), many researchers have recently been attracted to studying KHM. In this study, the proposed iSSO-KHM is based on an improved simplified swarm optimization (iSSO) and integrates a variable neighborhood search (VNS) for KHM clustering. As evidence of the utility of the proposed iSSO-KHM, we present extensive computational results on eight benchmark problems. From the computational results, the comparison appears to support the superiority of the proposed iSSO-KHM over previously developed algorithms for all experiments in the literature.Entities:
Mesh:
Year: 2016 PMID: 27846228 PMCID: PMC5112810 DOI: 10.1371/journal.pone.0164754
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
The new update c3 for three different cases.
| Case | ρc | original | updated | updated c3 |
|---|---|---|---|---|
| 1 | 0.12 | 6.7 | 6.7+0.3∙0.6∙(5.4−6.7) = 6.466 | (1.3, 4.5, |
| 2 | 0.45 | 6.7 | 6.7+0.3∙0.6∙(5.4−1.7) = 7.366 | (1.3, 4.5, |
| 3 | 0.99 | 6.7 | 6.7+0.3∙0.6∙(7.7−1.7) = 7.780 | (1.3, 4.5, |
The number of favg, fmin, fmax, fstd, navg, and fmea.
| 0.1 | 0.3 | 0.5 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Alg. | favg | fmin | fmax | fstd | navg | fmea | favg | fmin | fmax | fstd | navg | fmea | favg | fmin | fmax | fstd | navg | fmea | |
| 1.5 | CGS | S | 0 | S | BS | 0 | 0 | S | 0 | S | S | 0 | W | 0 | 0 | 0 | 0 | 0 | 0 |
| iSSO | |||||||||||||||||||
| MLS | 0 | S | 0 | 0 | A | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | S | |
| PSO | 0 | 0 | 0 | 0 | 0 | W | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
| SSO | A | A | 0 | 0 | 0 | AS | 0 | A | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
| 2.0 | CGS | S | S | S | BS | 0 | 0 | S | 0 | S | S | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| iSSO | |||||||||||||||||||
| MLS | 0 | 0 | 0 | 0 | A | W | B | 0 | B | B | 0 | W | B | 0 | B | B | 0 | 0 | |
| PSO | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | S | 0 | 0 | 0 | 0 | 0 | I | |
| SSO | 0 | A | 0 | 0 | 0 | A | 0 | 0 | 0 | 0 | 0 | A | 0 | 0 | 0 | 0 | 0 | AY | |
| 2.5 | CGS | S | 0 | S | BS | 0 | 0 | 0 | 0 | S | S | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| iSSO | |||||||||||||||||||
| MLS | 0 | S | 0 | 0 | A | W | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | G | |
| PSO | 0 | 0 | 0 | 0 | 0 | IS | 0 | 0 | 0 | 0 | 0 | BW | 0 | 0 | 0 | 0 | 0 | 0 | |
| SSO | 0 | A | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | A | 0 | 0 | 0 | 0 | 0 | I |
The values of favg, fmin, fmax, fstd, navg, and fmea for algorithms.
| Alg. | favg | fmin | fmax | fstd | navg | fmea |
|---|---|---|---|---|---|---|
| CGS | 5 (S) | 0 | 6 (S) | 9 (3B,6S) | 0 | 1 (W) |
| iSSO | ||||||
| MLS | 2 (B) | 2 (S) | 2 (B) | 2 (B) | 3 (A) | 5 (G, 3W, S) |
| PSO | 0 | 0 | 0 | 0 | 0 | 7 (B, 2I, 2S, 2W) |
| SSO | 1 (A) | 4 (A) | 0 | 0 | 0 | 8 (5A, I, S, Y) |
The values of favg, fmin, fmax, fstd, navg, and fmea for T = 0.1, 0.3, and 0.5.
| Alg. | favg | fmin | fmax | fstd | navg | fmea | |
|---|---|---|---|---|---|---|---|
| CGS | 3 (S) | 1 (S) | 3 (S) | 6 (3B,3S) | 0 | 0 | |
| iSSO | |||||||
| 0.1 | MLS | 0 | 2 (S) | 0 | 0 | 3 (A) | 2 (W) |
| PSO | 0 | 0 | 0 | 0 | 0 | 3 (I,S,W) | |
| SSO | 1 (A) | 3 (A) | 0 | 0 | 0 | 2 (A,S) | |
| CGS | 2 (S) | 0 | 3 (S) | 3 (S) | 0 | 1 (W) | |
| iSSO | |||||||
| 0.3 | MLS | 1 (B) | 0 | 1 (B) | 1 (B) | 0 | 1 (W) |
| PSO | 0 | 0 | 0 | 0 | 0 | 3 (B,S,W) | |
| SSO | 0 | 1 (A) | 0 | 0 | 0 | 2 (A) | |
| CGS | 0 | 0 | 0 | 0 | 0 | 0 | |
| iSSO | |||||||
| 0.5 | MLS | 1 (B) | 0 | 1 (B) | 1 (B) | 0 | 2 (G,S) |
| PSO | 0 | 0 | 0 | 0 | 0 | 1 (I) | |
| SSO | 0 | 0 | 0 | 0 | 0 | 3 (A,I,Y) |
The values of favg, fmin, fmax, fstd, navg, and fmea for p = 1.5, 2.0, and 2.5.
| Alg. | favg | fmin | fmax | fstd | navg | fmea | |
|---|---|---|---|---|---|---|---|
| 1.5 | CGS | 2 (S) | 0 | 2 (S) | 3 (B,2S) | 0 | 1 (W) |
| iSSO | |||||||
| MLS | 0 | 1 (S) | 0 | 0 | 1 (A) | 1 (S) | |
| PSO | 0 | 0 | 0 | 0 | 0 | 1 (W) | |
| SSO | 1 (A) | 2 (A) | 0 | 0 | 0 | 2 (A,S) | |
| 2 | CGS | 2 (S) | 1 (S) | 2 (S) | 3 (B,2S) | 0 | 0 |
| iSSO | |||||||
| MLS | 2 (B) | 0 | 2 (B) | 2 (B) | 1 (A) | 2 (W) | |
| PSO | 0 | 0 | 0 | 0 | 0 | 2 (I,S) | |
| SSO | 0 | 1 (A) | 0 | 0 | 0 | 4 (3A,Y) | |
| 2.5 | CGS | 1 (S) | 0 | 2 (S) | 3 (B,2S) | 0 | 0 |
| iSSO | |||||||
| MLS | 0 | 1 (S) | 0 | 0 | 1 (A) | 2 (G,W) | |
| PSO | 0 | 0 | 0 | 0 | 0 | 4 (B,I,S,W) | |
| SSO | 0 | 1 (A) | 0 | 0 | 0 | 2 (A,I) |
The top five Fmin for each dataset.
| ID | Alg. | Favg | Fmin | Fmax | Fstd | Navg | Fmeasure | ||
|---|---|---|---|---|---|---|---|---|---|
| A | 0.5 | 2.5 | iSSO | 377.100 | 377.096 | 377.115 | 3.92E-03 | 254.26 | 57.70% |
| 0.3 | 2.5 | iSSO | 377.129 | 377.097 | 377.226 | 3.42E-02 | 152.28 | 58.64% | |
| 0.3 | 2.5 | SSO | 380.591 | 377.116 | 403.228 | 5.83E+00 | 146.32 | 58.67% | |
| 0.5 | 2.5 | SSO | 385.472 | 377.157 | 414.058 | 1.04E+01 | 241.32 | 57.69% | |
| 0.5 | 2.5 | PSO | 418.457 | 377.634 | 426.647 | 1.96E+01 | 238.2 | 57.59% | |
| B | 0.5 | 1.5 | iSSO | 424.867 | 424.867 | 424.867 | 1.12E-06 | 1685.48 | 96.15% |
| 0.3 | 1.5 | iSSO | 424.867 | 424.867 | 424.867 | 1.71E-05 | 1023.24 | 96.12% | |
| 0.1 | 2.5 | iSSO | 424.886 | 424.867 | 424.972 | 2.66E-02 | 356.56 | 96.16% | |
| 0.1 | 2 | iSSO | 424.883 | 424.867 | 424.998 | 2.42E-02 | 357.28 | 96.14% | |
| 0.1 | 1.5 | iSSO | 424.888 | 424.868 | 424.967 | 2.71E-02 | 341.78 | 96.19% | |
| C | 0.5 | 1.5 | iSSO | 7068.628 | 7068.628 | 7068.628 | 8.33E-06 | 722.9 | 39.28% |
| 0.3 | 1.5 | iSSO | 7068.630 | 7068.628 | 7068.632 | 1.08E-03 | 436.18 | 39.25% | |
| 0.1 | 2.5 | iSSO | 7069.794 | 7069.146 | 7070.432 | 3.35E-01 | 150.64 | 39.33% | |
| 0.1 | 2 | iSSO | 7070.008 | 7069.150 | 7070.889 | 4.04E-01 | 150.66 | 39.39% | |
| 0.1 | 1.5 | iSSO | 7069.977 | 7069.189 | 7070.878 | 4.25E-01 | 144.18 | 39.23% | |
| G | 0.3 | 1.5 | iSSO | 1059.336 | 1059.336 | 1059.336 | 7.59E-09 | 5099.84 | 41.42% |
| 0.3 | 2 | iSSO | 1059.336 | 1059.336 | 1059.336 | 6.87E-09 | 5100.06 | 41.33% | |
| 0.1 | 2.5 | iSSO | 1059.336 | 1059.336 | 1059.337 | 6.21E-06 | 1780.36 | 41.39% | |
| 0.1 | 1.5 | iSSO | 1059.336 | 1059.336 | 1059.337 | 5.95E-06 | 1705.48 | 41.39% | |
| 0.1 | 2 | iSSO | 1059.336 | 1059.336 | 1059.337 | 9.23E-06 | 1779.64 | 41.50% | |
| I | 0.3 | 1.5 | iSSO | 181.728 | 181.728 | 181.728 | 2.04E-11 | 9494.02 | 75.31% |
| 0.3 | 2 | iSSO | 181.728 | 181.728 | 181.728 | 1.83E-11 | 9495.64 | 75.36% | |
| 0.1 | 1.5 | iSSO | 181.728 | 181.728 | 181.728 | 1.08E-07 | 3185.04 | 75.25% | |
| 0.1 | 2 | iSSO | 181.728 | 181.728 | 181.728 | 7.83E-08 | 3313.24 | 75.41% | |
| 0.1 | 2.5 | iSSO | 181.728 | 181.728 | 181.728 | 6.70E-08 | 3316.62 | 75.26% | |
| S | 0.5 | 1.5 | iSSO | 42852347.416 | 42852345.652 | 42852350.697 | 1.51E+00 | 412.40 | 53.18% |
| 0.5 | 2 | iSSO | 42852347.460 | 42852345.678 | 42852351.912 | 1.61E+00 | 412.80 | 53.10% | |
| 0.3 | 2 | iSSO | 42852454.042 | 42852348.975 | 42852724.919 | 9.39E+01 | 248.00 | 53.19% | |
| 0.3 | 1.5 | iSSO | 42852441.557 | 42852356.230 | 42852682.740 | 7.27E+01 | 247.90 | 53.07% | |
| 0.3 | 2 | CGS | 42852405.328 | 42852368.882 | 42852456.610 | 2.33E+01 | 184.10 | 53.14% | |
| W | 0.3 | 1.5 | iSSO | 5388248.279 | 5388248.279 | 5388248.279 | 4.70E-09 | 5095.64 | 62.07% |
| 0.3 | 2 | iSSO | 5388248.279 | 5388248.279 | 5388248.279 | 4.70E-09 | 5095.72 | 62.22% | |
| 0.1 | 2 | iSSO | 5388248.279 | 5388248.279 | 5388248.279 | 4.69E-08 | 1776.94 | 62.15% | |
| 0.1 | 1.5 | iSSO | 5388248.279 | 5388248.279 | 5388248.279 | 1.21E-07 | 1704.06 | 62.20% | |
| 0.1 | 2.5 | iSSO | 5388248.279 | 5388248.279 | 5388248.279 | 6.11E-08 | 1779.74 | 62.08% | |
| Y | 0.5 | 2.5 | iSSO | 72.833 | 72.833 | 72.836 | 9.49E-04 | 769.6 | 56.21% |
| 0.3 | 2.5 | iSSO | 72.837 | 72.833 | 72.857 | 5.41E-03 | 465.74 | 56.15% | |
| 0.3 | 2.5 | SSO | 74.094 | 72.952 | 75.856 | 8.53E-01 | 445.44 | 56.05% | |
| 0.5 | 2.5 | SSO | 73.942 | 73.038 | 75.630 | 6.96E-01 | 734.42 | 56.09% | |
| 0.3 | 2.5 | PSO | 74.343 | 73.185 | 75.418 | 6.40E-01 | 399.8 | 55.84% |