Literature DB >> 27843709

A Computational Model of Cellular Engraftment on Lung Scaffolds.

Joshua J Pothen1, Vignesh Rajendran1, Darcy Wagner2, Daniel J Weiss1, Bradford J Smith1, Baoshun Ma1, Jason H T Bates1.   

Abstract

The possibility that stem cells might be used to regenerate tissue is now being investigated for a variety of organs, but these investigations are still essentially exploratory and have few predictive tools available to guide experimentation. We propose, in this study, that the field of lung tissue regeneration might be better served by predictive tools that treat stem cells as agents that obey certain rules of behavior governed by both their phenotype and their environment. Sufficient knowledge of these rules of behavior would then, in principle, allow lung tissue development to be simulated computationally. Toward this end, we developed a simple agent-based computational model to simulate geographic patterns of cells seeded onto a lung scaffold. Comparison of the simulated patterns to those observed experimentally supports the hypothesis that mesenchymal stem cells proliferate preferentially toward the scaffold boundary, whereas alveolar epithelial cells do not. This demonstrates that a computational model of this type has the potential to assist in the discovery of rules of cellular behavior.

Entities:  

Keywords:  agent-based model; image processing; lung scaffold; stem cells

Year:  2016        PMID: 27843709      PMCID: PMC5107660          DOI: 10.1089/biores.2016.0031

Source DB:  PubMed          Journal:  Biores Open Access        ISSN: 2164-7844


  25 in total

1.  Comparative assessment of detergent-based protocols for mouse lung de-cellularization and re-cellularization.

Authors:  John M Wallis; Zachary D Borg; Amanda B Daly; Bin Deng; Bryan A Ballif; Gilman B Allen; Diane M Jaworski; Daniel J Weiss
Journal:  Tissue Eng Part C Methods       Date:  2012-01-26       Impact factor: 3.056

Review 2.  Computational modelling of cell spreading and tissue regeneration in porous scaffolds.

Authors:  Bram G Sengers; Mark Taylor; Colin P Please; Richard O C Oreffo
Journal:  Biomaterials       Date:  2006-12-18       Impact factor: 12.479

3.  Modelling epidermis homoeostasis and psoriasis pathogenesis.

Authors:  Hong Zhang; Wenhong Hou; Laurence Henrot; Sylvianne Schnebert; Marc Dumas; Catherine Heusèle; Jin Yang
Journal:  J R Soc Interface       Date:  2015-02-06       Impact factor: 4.118

4.  Agent-based modeling of osteogenic differentiation of mesenchymal stem cells in porous biomaterials.

Authors:  Elif S Bayrak; Hamidreza Mehdizadeh; Banu Akar; Sami I Somo; Eric M Brey; Ali Cinar
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2014

5.  The inflammatory twitch as a general strategy for controlling the host response.

Authors:  Joshua J Pothen; Matthew E Poynter; Jason H T Bates
Journal:  J Immunol       Date:  2013-02-20       Impact factor: 5.422

6.  Structural and biochemical modification of a collagen scaffold to selectively enhance MSC tenogenic, chondrogenic, and osteogenic differentiation.

Authors:  Steven R Caliari; Brendan A C Harley
Journal:  Adv Healthc Mater       Date:  2014-02-25       Impact factor: 9.933

7.  Strategies for whole lung tissue engineering.

Authors:  Elizabeth A Calle; Mahboobe Ghaedi; Sumati Sundaram; Amogh Sivarapatna; Michelle K Tseng; Laura E Niklason
Journal:  IEEE Trans Biomed Eng       Date:  2014-03-28       Impact factor: 4.538

8.  Effect of dedifferentiation on time to mutation acquisition in stem cell-driven cancers.

Authors:  Alexandra Jilkine; Ryan N Gutenkunst
Journal:  PLoS Comput Biol       Date:  2014-03-06       Impact factor: 4.475

9.  Computational promoter modeling identifies the modes of transcriptional regulation in hematopoietic stem cells.

Authors:  Sung-Joon Park; Terumasa Umemoto; Mihoko Saito-Adachi; Yoshiko Shiratsuchi; Masayuki Yamato; Kenta Nakai
Journal:  PLoS One       Date:  2014-04-07       Impact factor: 3.240

10.  Understanding epigenetic changes in aging stem cells--a computational model approach.

Authors:  Jens Przybilla; Thimo Rohlf; Markus Loeffler; Joerg Galle
Journal:  Aging Cell       Date:  2014-01-15       Impact factor: 9.304

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