| Literature DB >> 27843554 |
Rafael B Gelaleti1, Débora C Damasceno1, Daisy M F Salvadori2, Iracema M P Calderon1, Roberto A A Costa1, Fernanda Piculo1, David C Martins3, Marilza V C Rudge1.
Abstract
OBJECTIVE: To evaluate the gene expression profile of whole blood cells in pregnant women without diabetes (with positive screening and negative diagnosis for gestational diabetes mellitus (GDM)) compared with pregnant women with negative screening for GDM. RESEARCH DESIGN AND METHODS: Pregnant women were recruited in the Diabetes Perinatal Research Centre-Botucatu Medical School-UNESP and Botucatuense Mercy Hospital (UNIMED). Distributed into 2 groups: control (n=8), women with negative screening and non-diabetic (ND, n=13), with positive screening and negative diagnosis of GDM. A peripheral blood sample was collected for glucose, glycated hemoglobin, and microarray gene expression analyses.Entities:
Keywords: Diagnostic Criteria; Hyperglycemia; Microarray Analysis; Screening
Year: 2016 PMID: 27843554 PMCID: PMC5073650 DOI: 10.1136/bmjdrc-2016-000273
Source DB: PubMed Journal: BMJ Open Diabetes Res Care ISSN: 2052-4897
Clinical and laboratorial characteristics of the study population
| Groups | |||
|---|---|---|---|
| Control | ND | p Value | |
| Pregnant women | 08 | 13 | – |
| Age (years)* | 29.1±6.02 | 27.09±6.78 | 0.52 |
| Fasting glycemia (mg/dL)* | 79.30±4.73 | 82.09±6.53 | 0.39 |
| Glycated hemoglobin (%)* | 5.15±0.55 | 5.45±0.53 | 0.07 |
| Initial BMI (kg/m2)* | 23.6±1.08 (normal) | 28.22±5.15 (overweight) | 0.01 |
| Final BMI (kg/m2)* | 28.78±2.70 | 32.37±3.39 | 0.02 |
| Personal history, obstetric and/or familial of diabetes (%)† | 0 | 100 | 0.01 |
Data presented as mean±SD.
*p<0.05—Significant difference compared with control group (Student t-test).
†p<0.05—Significant difference compared with control group (Fisher's exact test).
BMI, body mass index; ND, non-diabetic (positive screening and negative diagnosis).
Genes differentially expressed between the control and non-diabetic groups
| GenBank accession number | Gene symbol or transcribed unidentified | Gene description | p Value | ‘Fold change’ |
|---|---|---|---|---|
| Eukaryotic elongation factor 2 kinase | 0.00012 | 1.21 | ||
| BTB domain containing 16 | 0.00029 | 1.07 | ||
| Cerebellar degeneration-related protein 2 | 0.00044 | 1.12 | ||
| Small nucleolar RNA host gene 20 | 0.00006 | 1.10 | ||
| OR2F2 olfactory receptor family 2 subfamily F member 2 | 0.00015 | 1.11 | ||
| POLR3A polymerase (RNA) III subunit A | 0.00017 | 1.11 | ||
| APC membrane recruitment protein 1 | 0.00033 | 1.10 | ||
| A-kinase anchoring protein 5 | 0.00024 | 0.95 | ||
| Zinc finger protein 441 | 0.00041 | 0.91 | ||
| Multiple inositol-polyphosphate phosphatase 1 | 0.00048 | 0.89 | ||
| No description | 0.00005 | 0.91 | ||
| No description | 0.00049 | 0.90 | ||
| No description | 0.00024 | 0.89 | ||
| No description | 0.00010 | 0.91 | ||
| No description | 0.00012 | 0.88 | ||
| No description | 0.00030 | 0.90 | ||
| FLJ46906 uncharacterized LOC441172 | 0.00033 | 0.93 | ||
| No description | 0.00042 | 0.92 | ||
| No description | 0.00045 | 0.91 | ||
| AADACP1 arylacetamide deacetylase pseudogene 1 | 0.00033 | 0.92 | ||
| No description | 0.00040 | 0.89 | ||
| No description | 0.00022 | 0.92 |
p<0.05—Significant difference compared with the control group (F-Test with Benjamini-Hochberg correction).
Figure 1Heat map of gene expression comparisons between the control and non-diabetic (ND) groups. Legend: yellow (upregulated), red (downregulated) and white (no modulation).
Figure 2Genetic interaction network of the EEF2K gene. Confidence score of 0.7 (high confidence) and not more than 50 interactions per gene. Prediction methods: experiments (purple lines) and databases (blue lines).
Figure 3Gene interaction network of the AKAP5 gene. Confidence score of 0.7 (high confidence) and not more than 50 interactions per gene. Prediction methods: experiments (purple lines) and databases (blue lines).
Genetic interactions table of the EEF2K gene
| Gene ontology | Biological processes | Number of genes involved* | p Value |
|---|---|---|---|
| GO:0019538 | Protein metabolic processes | 16 | 3.2e−6 |
| GO:0007049 | Cell cycle | 15 | 5.3e−11 |
| GO:0010467 | Gene expression | 15 | 2.9e−5 |
| GO:0008286 | Insulin receptor signaling pathway | 8 | 2.4e−9 |
| GO:0032869 | Cellular response to insulin stimulation | 8 | 2.7e−8 |
| GO:0032868 | Insulin response | 8 | 1.0e−7 |
Shows the biological processes of interest involved in the network.
p<0.05—Significance of the biological process in the network.
*Number of genes in the interaction which are related to the biological process described.
Genetic interactions table of the AKAP5 gene
| Gene ontology | Biological processes | Number of genes involved* | p Value |
|---|---|---|---|
| GO:0051046 | Secretion regulation | 18 | 9.2e−18 |
| GO:0050796 | Regulation of insulin secretion | 16 | 1.4e−22 |
| GO:0050708 | Regulation of protein secretion | 16 | 9.2e−18 |
| GO:0006955 | Immune response | 15 | 2.7e−9 |
| GO:0002376 | Immune system processes | 14 | 4.2e−6 |
Shows the biological processes of interest involved in the network.
p<0.05—Significance of the biological process in the network.
*Number of genes in the interaction which are related to the biological process described.
Figure 4Relative mRNA levels of EEF2K in the control and non-diabetic (ND) groups. *p<0.05—Significant difference compared with the control group (Student t-test).