Literature DB >> 27841888

Estimating the energy of intramolecular hydrogen bonds from 1H NMR and QTAIM calculations.

Andrei V Afonin1, Alexander V Vashchenko1, Mark V Sigalov2.   

Abstract

The values of the downfield chemical shift of the bridge hydrogen atom were estimated for a series of compounds containing an intramolecular hydrogen bond O-HO, O-HN, O-HHal, N-HO, N-HN, C-HO, C-HN and C-HHal. Based on these values, the empirical estimation of the hydrogen bond energy was obtained by using known relationships. For the compounds containing an intramolecular hydrogen bond, the DFT B3LYP/6-311++G(d,p) method was used both for geometry optimization and for QTAIM calculations of the topological parameters (electron density ρBCP and the density of potential energy V in the critical point of the hydrogen bond). The calculated geometric and topological parameters of hydrogen bonds were also used to evaluate the energy of the hydrogen bond based on the equations from the literature. Comparison of calibrating energies from the 1H NMR data with the energies predicted by calculations showed that the most reliable are the linear dependence on the topological ρBCP and V parameters. However, the correct prediction of the hydrogen bond energy is determined by proper fitting of the linear regression coefficients. To obtain them, new linear relationships were found between the calculated ρBCP and V parameters and the hydrogen bond energies obtained from empirical 1H NMR data. These relationships allow the comparison of the energies of different types of hydrogen bonds for various molecules and biological ensembles.

Entities:  

Year:  2016        PMID: 27841888     DOI: 10.1039/c6ob01604a

Source DB:  PubMed          Journal:  Org Biomol Chem        ISSN: 1477-0520            Impact factor:   3.876


  11 in total

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2.  Energy of Intramolecular Hydrogen Bonding in ortho-Hydroxybenzaldehydes, Phenones and Quinones. Transfer of Aromaticity from ipso-Benzene Ring to the Enol System(s).

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5.  Synthesis, Crystal Structure, and Computational Methods of Vanadium and Copper Compounds as Potential Drugs for Cancer Treatment.

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Review 6.  A Critical Overview of Current Theoretical Methods of Estimating the Energy of Intramolecular Interactions.

Authors:  Mirosław Jabłoński
Journal:  Molecules       Date:  2020-11-25       Impact factor: 4.411

7.  Hydrogen Bonds with Fluorine in Ligand-Protein Complexes-the PDB Analysis and Energy Calculations.

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Journal:  Molecules       Date:  2022-02-02       Impact factor: 4.411

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Review 9.  Molecular Tailoring Approach for the Estimation of Intramolecular Hydrogen Bond Energy.

Authors:  Milind M Deshmukh; Shridhar R Gadre
Journal:  Molecules       Date:  2021-05-14       Impact factor: 4.411

10.  Intramolecular Hydrogen Bonds in Normal and Sterically Compressed o-Hydroxy Aromatic Aldehydes. Isotope Effects on Chemical Shifts and Hydrogen Bond Strength.

Authors:  Poul Erik Hansen; Fadhil S Kamounah; Bahjat A Saeed; Mark J MacLachlan; Jens Spanget-Larsen
Journal:  Molecules       Date:  2019-12-11       Impact factor: 4.411

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