Literature DB >> 27841505

From network reliability to the Ising model: A parallel scheme for estimating the joint density of states.

Yihui Ren1, Stephen Eubank1,2,3, Madhurima Nath1,2.   

Abstract

Network reliability is the probability that a dynamical system composed of discrete elements interacting on a network will be found in a configuration that satisfies a particular property. We introduce a reliability property, Ising feasibility, for which the network reliability is the Ising model's partition function. As shown by Moore and Shannon, the network reliability can be separated into two factors: structural, solely determined by the network topology, and dynamical, determined by the underlying dynamics. In this case, the structural factor is known as the joint density of states. Using methods developed to approximate the structural factor for other reliability properties, we simulate the joint density of states, yielding an approximation for the partition function. Based on a detailed examination of why naïve Monte Carlo sampling gives a poor approximation, we introduce a parallel scheme for estimating the joint density of states using a Markov-chain Monte Carlo method with a spin-exchange random walk. This parallel scheme makes simulating the Ising model in the presence of an external field practical on small computer clusters for networks with arbitrary topology with ∼10^{6} energy levels and more than 10^{308} microstates.

Entities:  

Year:  2016        PMID: 27841505      PMCID: PMC5439221          DOI: 10.1103/PhysRevE.94.042125

Source DB:  PubMed          Journal:  Phys Rev E        ISSN: 2470-0045            Impact factor:   2.529


  10 in total

1.  Efficient, multiple-range random walk algorithm to calculate the density of states.

Authors:  F Wang; D P Landau
Journal:  Phys Rev Lett       Date:  2001-03-05       Impact factor: 9.161

2.  Exact distribution of energies in the two-dimensional ising model.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-01-01       Impact factor: 9.161

3.  Determining the density of states for classical statistical models: a random walk algorithm to produce a flat histogram.

Authors:  F Wang; D P Landau
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2001-10-17

4.  Nonuniversal critical dynamics in Monte Carlo simulations.

Authors: 
Journal:  Phys Rev Lett       Date:  1987-01-12       Impact factor: 9.161

5.  Understanding and improving the Wang-Landau algorithm.

Authors:  Chenggang Zhou; R N Bhatt
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2005-08-31

6.  Generic, hierarchical framework for massively parallel Wang-Landau sampling.

Authors:  Thomas Vogel; Ying Wai Li; Thomas Wüst; David P Landau
Journal:  Phys Rev Lett       Date:  2013-05-22       Impact factor: 9.161

7.  Scalable replica-exchange framework for Wang-Landau sampling.

Authors:  Thomas Vogel; Ying Wai Li; Thomas Wüst; David P Landau
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2014-08-05

8.  Model of protein folding: incorporation of a one-dimensional short-range (Ising) model into a three-dimensional model.

Authors:  S Tanaka; H A Scheraga
Journal:  Proc Natl Acad Sci U S A       Date:  1977-04       Impact factor: 11.205

9.  Finding the lowest free energy conformation of a protein is an NP-hard problem: proof and implications.

Authors:  R Unger; J Moult
Journal:  Bull Math Biol       Date:  1993-11       Impact factor: 1.758

10.  Network reliability: the effect of local network structure on diffusive processes.

Authors:  Mina Youssef; Yasamin Khorramzadeh; Stephen Eubank
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2013-11-21
  10 in total

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