| Literature DB >> 27840702 |
Alessio Caruso1, Benjamin Blair1, Joseph M Tanski1.
Abstract
The two title compounds are analogs of 1-indanone that are substituted at the 6-position with chlorine and bromine. Although very similar in mol-ecular structure, the crystal structures are not isomorphous and reveal that 6-chloro-indan-1-one, C9H7ClO (I), and 6-bromo-indan-1-one, C9H7BrO (II), exhibit unique inter-molecular packing motifs. The mol-ecules of the chloro analog (I) pack with a herringbone packing motif of C-H⋯O inter-actions, whereas the bromo derivative (II) packs with offset face-to-face π-stacking, C-H⋯O, C-H⋯Br and Br⋯O inter-actions. Compound (II) was refined as a two-component non-merohedral twin, BASF 0.0762 (5).Entities:
Keywords: C—H⋯X interactions; crystal structure; haloindanones; π-stacking
Year: 2016 PMID: 27840702 PMCID: PMC5095827 DOI: 10.1107/S2056989016015371
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1A view of 6-chloroindan-1-one (I) with the atom-numbering scheme. Displacement ellipsoids are shown at the 50% probability level.
Figure 2A view of 6-bromoindan-1-one (II) with the atom-numbering scheme. Displacement ellipsoids are shown at the 50% probability level.
Figure 3A view of the intermolecular C—H⋯O contacts in 6-chloroindan-1-one (I). See Table 1 ▸ for symmetry codes (i) and (ii). In this and subsequent figures the C—H⋯X interactions are shown as dashed lines.
Hydrogen-bond geometry (Å, °) for (I)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C2—H2 | 0.99 | 2.56 | 3.1933 (15) | 121 |
| C2—H2 | 0.99 | 2.59 | 3.5448 (14) | 161 |
Symmetry codes: (i) ; (ii) .
Figure 4A view of the sheet structure in 6-chloroindan-1-one (I) formed by C—H⋯O contacts. See Table 1 ▸ for symmetry codes (i) and (ii).
Figure 5A view of the alternating offset face-to-face π-stacking and C—H⋯Br interaction in 6-bromoindan-1-one (II) with the thick black line indicating a centroid-to-centroid interaction. See Table 2 ▸ for symmetry code (iii).
Hydrogen-bond geometry (Å, °) for (II)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C3—H3 | 0.99 | 2.45 | 3.408 (4) | 162 |
| C5—H5 | 0.95 | 2.55 | 3.253 (4) | 131 |
| C2—H2 | 0.99 | 3.05 | 3.898 (3) | 145 |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 6A view of the intermolecular C—H⋯O and Br⋯O contacts (dashed lines) in 6-bromoindan-1-one (II). See Table 2 ▸ for symmetry codes (i) and (ii).
Experimental details
| (I) | (II) | |
|---|---|---|
| Crystal data | ||
| Chemical formula | C9H7ClO | C9H7BrO |
|
| 166.60 | 211.06 |
| Crystal system, space group | Monoclinic, | Monoclinic, |
| Temperature (K) | 125 | 125 |
|
| 16.319 (6), 6.024 (2), 7.745 (3) | 6.489 (2), 17.101 (6), 7.224 (3) |
| β (°) | 99.524 (5) | 102.964 (5) |
|
| 750.9 (5) | 781.2 (5) |
|
| 4 | 4 |
| Radiation type | Mo | Mo |
| μ (mm−1) | 0.44 | 5.19 |
| Crystal size (mm) | 0.28 × 0.25 × 0.14 | 0.40 × 0.21 × 0.05 |
| Data collection | ||
| Diffractometer | Bruker APEXII CCD | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( | Multi-scan ( |
|
| 0.84, 0.94 | 0.55, 0.78 |
| No. of measured, independent and observed [ | 18572, 2291, 2158 | 4453, 4453, 3600 |
|
| 0.027 | 0.046 |
| (sin θ/λ)max (Å−1) | 0.716 | 0.716 |
| Refinement | ||
|
| 0.030, 0.083, 1.08 | 0.030, 0.152, 1.03 |
| No. of reflections | 2291 | 4453 |
| No. of parameters | 100 | 101 |
| H-atom treatment | H-atom parameters constrained | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.47, −0.23 | 1.15, −1.15 |
Computer programs: APEX2 and SAINT (Bruker, 2013 ▸), SHELXS and SHELXTL2014 (Sheldrick, 2008 ▸), SHELXL2014/6 (Sheldrick, 2015 ▸), OLEX2 (Dolomanov et al., 2009 ▸) and Mercury (Macrae et al., 2008 ▸).
| C9H7ClO | |
| Monoclinic, | Mo |
| Cell parameters from 9875 reflections | |
| θ = 2.5–30.5° | |
| µ = 0.44 mm−1 | |
| β = 99.524 (5)° | |
| Block, colourless | |
| 0.28 × 0.25 × 0.14 mm |
| Bruker APEXII CCD diffractometer | 2291 independent reflections |
| Radiation source: fine-focus sealed tube | 2158 reflections with |
| Graphite monochromator | |
| Detector resolution: 8.3333 pixels mm-1 | θmax = 30.6°, θmin = 2.5° |
| φ and ω scans | |
| Absorption correction: multi-scan (SADABS; Bruker, 2013) | |
| 18572 measured reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 2291 reflections | Δρmax = 0.47 e Å−3 |
| 100 parameters | Δρmin = −0.23 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Cl1 | 0.44180 (2) | 0.68505 (5) | 0.30384 (4) | 0.02625 (9) | |
| O1 | 0.09308 (5) | 0.71579 (13) | 0.08199 (10) | 0.02037 (16) | |
| C1 | 0.12100 (5) | 0.87485 (15) | 0.17008 (11) | 0.01444 (17) | |
| C2 | 0.07137 (6) | 1.06661 (17) | 0.22843 (12) | 0.01704 (18) | |
| H2A | 0.035 | 1.0136 | 0.3102 | 0.02* | |
| H2B | 0.0363 | 1.1363 | 0.1262 | 0.02* | |
| C3 | 0.13555 (6) | 1.23410 (17) | 0.32015 (14) | 0.02079 (19) | |
| H3A | 0.1328 | 1.3753 | 0.254 | 0.025* | |
| H3B | 0.1257 | 1.2653 | 0.4405 | 0.025* | |
| C4 | 0.21867 (6) | 1.12199 (16) | 0.32313 (12) | 0.01535 (17) | |
| C5 | 0.29771 (6) | 1.19687 (16) | 0.39740 (13) | 0.01873 (19) | |
| H5A | 0.3046 | 1.3374 | 0.4536 | 0.022* | |
| C6 | 0.36615 (6) | 1.06251 (17) | 0.38780 (13) | 0.01935 (19) | |
| H6A | 0.4203 | 1.1114 | 0.4374 | 0.023* | |
| C7 | 0.35530 (6) | 0.85462 (17) | 0.30482 (13) | 0.01715 (18) | |
| C8 | 0.27767 (6) | 0.77850 (16) | 0.22694 (12) | 0.01593 (17) | |
| H8A | 0.2708 | 0.6394 | 0.1685 | 0.019* | |
| C9 | 0.21000 (5) | 0.91673 (15) | 0.23876 (11) | 0.01374 (17) |
| Cl1 | 0.01319 (12) | 0.03164 (15) | 0.03279 (15) | 0.00500 (8) | 0.00046 (9) | −0.00599 (10) |
| O1 | 0.0170 (3) | 0.0196 (3) | 0.0230 (3) | −0.0015 (3) | −0.0012 (3) | −0.0029 (3) |
| C1 | 0.0134 (4) | 0.0153 (4) | 0.0143 (4) | 0.0008 (3) | 0.0012 (3) | 0.0028 (3) |
| C2 | 0.0153 (4) | 0.0186 (4) | 0.0174 (4) | 0.0039 (3) | 0.0033 (3) | 0.0016 (3) |
| C3 | 0.0202 (4) | 0.0180 (4) | 0.0233 (4) | 0.0050 (4) | 0.0013 (4) | −0.0045 (4) |
| C4 | 0.0174 (4) | 0.0145 (4) | 0.0138 (4) | 0.0008 (3) | 0.0017 (3) | 0.0006 (3) |
| C5 | 0.0211 (4) | 0.0158 (4) | 0.0181 (4) | −0.0026 (3) | −0.0001 (3) | −0.0020 (3) |
| C6 | 0.0164 (4) | 0.0208 (4) | 0.0197 (4) | −0.0041 (3) | −0.0004 (3) | −0.0003 (3) |
| C7 | 0.0124 (4) | 0.0203 (4) | 0.0184 (4) | 0.0012 (3) | 0.0014 (3) | 0.0000 (3) |
| C8 | 0.0138 (4) | 0.0161 (4) | 0.0175 (4) | 0.0007 (3) | 0.0015 (3) | −0.0017 (3) |
| C9 | 0.0133 (4) | 0.0142 (4) | 0.0134 (4) | 0.0000 (3) | 0.0011 (3) | 0.0003 (3) |
| Cl1—C7 | 1.7435 (11) | C4—C9 | 1.3947 (13) |
| O1—C1 | 1.2200 (12) | C4—C5 | 1.3974 (14) |
| C1—C9 | 1.4834 (13) | C5—C6 | 1.3913 (15) |
| C1—C2 | 1.5218 (13) | C5—H5A | 0.95 |
| C2—C3 | 1.5406 (15) | C6—C7 | 1.4054 (14) |
| C2—H2A | 0.99 | C6—H6A | 0.95 |
| C2—H2B | 0.99 | C7—C8 | 1.3880 (13) |
| C3—C4 | 1.5120 (14) | C8—C9 | 1.3981 (13) |
| C3—H3A | 0.99 | C8—H8A | 0.95 |
| C3—H3B | 0.99 | ||
| O1—C1—C9 | 125.95 (9) | C5—C4—C3 | 128.81 (9) |
| O1—C1—C2 | 126.46 (9) | C6—C5—C4 | 119.00 (9) |
| C9—C1—C2 | 107.58 (8) | C6—C5—H5A | 120.5 |
| C1—C2—C3 | 106.23 (8) | C4—C5—H5A | 120.5 |
| C1—C2—H2A | 110.5 | C5—C6—C7 | 120.09 (9) |
| C3—C2—H2A | 110.5 | C5—C6—H6A | 120.0 |
| C1—C2—H2B | 110.5 | C7—C6—H6A | 120.0 |
| C3—C2—H2B | 110.5 | C8—C7—C6 | 122.01 (9) |
| H2A—C2—H2B | 108.7 | C8—C7—Cl1 | 119.08 (8) |
| C4—C3—C2 | 104.73 (8) | C6—C7—Cl1 | 118.90 (7) |
| C4—C3—H3A | 110.8 | C7—C8—C9 | 116.67 (9) |
| C2—C3—H3A | 110.8 | C7—C8—H8A | 121.7 |
| C4—C3—H3B | 110.8 | C9—C8—H8A | 121.7 |
| C2—C3—H3B | 110.8 | C4—C9—C8 | 122.60 (8) |
| H3A—C3—H3B | 108.9 | C4—C9—C1 | 109.64 (8) |
| C9—C4—C5 | 119.62 (9) | C8—C9—C1 | 127.76 (9) |
| C9—C4—C3 | 111.57 (8) | ||
| O1—C1—C2—C3 | −174.57 (9) | Cl1—C7—C8—C9 | 177.06 (7) |
| C9—C1—C2—C3 | 5.05 (10) | C5—C4—C9—C8 | 0.96 (14) |
| C1—C2—C3—C4 | −4.48 (10) | C3—C4—C9—C8 | −178.67 (9) |
| C2—C3—C4—C9 | 2.39 (11) | C5—C4—C9—C1 | −179.59 (8) |
| C2—C3—C4—C5 | −177.19 (9) | C3—C4—C9—C1 | 0.78 (11) |
| C9—C4—C5—C6 | −1.02 (14) | C7—C8—C9—C4 | 0.33 (14) |
| C3—C4—C5—C6 | 178.54 (9) | C7—C8—C9—C1 | −179.02 (9) |
| C4—C5—C6—C7 | −0.18 (15) | O1—C1—C9—C4 | 175.91 (9) |
| C5—C6—C7—C8 | 1.53 (15) | C2—C1—C9—C4 | −3.71 (10) |
| C5—C6—C7—Cl1 | −177.11 (8) | O1—C1—C9—C8 | −4.67 (15) |
| C6—C7—C8—C9 | −1.57 (14) | C2—C1—C9—C8 | 175.71 (9) |
| H··· | ||||
| C2—H2 | 0.99 | 2.56 | 3.1933 (15) | 121 |
| C2—H2 | 0.99 | 2.59 | 3.5448 (14) | 161 |
| C9H7BrO | |
| Monoclinic, | Mo |
| Cell parameters from 9955 reflections | |
| θ = 2.4–30.6° | |
| µ = 5.19 mm−1 | |
| β = 102.964 (5)° | |
| Block, colourless | |
| 0.40 × 0.21 × 0.05 mm |
| Bruker APEXII CCD diffractometer | 4453 independent reflections |
| Radiation source: fine-focus sealed tube | 3600 reflections with |
| Graphite monochromator | |
| Detector resolution: 8.3333 pixels mm-1 | θmax = 30.6°, θmin = 2.4° |
| φ and ω scans | |
| Absorption correction: multi-scan ( | |
| 4453 measured reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 4453 reflections | Δρmax = 1.15 e Å−3 |
| 101 parameters | Δρmin = −1.15 e Å−3 |
| Experimental. BASF 0.0762 (5) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refined as a 2-component twin |
| Br1 | 0.34409 (5) | 0.45945 (2) | 0.19485 (4) | 0.02009 (16) | |
| O1 | 0.4929 (3) | 0.12531 (11) | 0.2717 (4) | 0.0233 (5) | |
| C1 | 0.3083 (4) | 0.14135 (17) | 0.2062 (4) | 0.0159 (5) | |
| C2 | 0.1260 (4) | 0.08352 (17) | 0.1453 (4) | 0.0179 (5) | |
| H2A | 0.1117 | 0.0502 | 0.2537 | 0.021* | |
| H2B | 0.1515 | 0.0494 | 0.0419 | 0.021* | |
| C3 | −0.0764 (5) | 0.13304 (17) | 0.0755 (4) | 0.0192 (6) | |
| H3A | −0.1424 | 0.1212 | −0.0589 | 0.023* | |
| H3B | −0.1806 | 0.1229 | 0.1539 | 0.023* | |
| C4 | −0.0002 (4) | 0.21670 (16) | 0.0973 (4) | 0.0154 (5) | |
| C5 | −0.1162 (5) | 0.28574 (17) | 0.0538 (4) | 0.0194 (5) | |
| H5A | −0.2646 | 0.2838 | 0.0039 | 0.023* | |
| C6 | −0.0119 (4) | 0.35734 (17) | 0.0842 (4) | 0.0178 (5) | |
| H6A | −0.0895 | 0.4045 | 0.0544 | 0.021* | |
| C7 | 0.2070 (4) | 0.36019 (16) | 0.1585 (4) | 0.0158 (5) | |
| C8 | 0.3257 (4) | 0.29262 (17) | 0.2034 (4) | 0.0155 (5) | |
| H8A | 0.474 | 0.2947 | 0.2538 | 0.019* | |
| C9 | 0.2184 (4) | 0.22114 (15) | 0.1714 (4) | 0.0143 (5) |
| Br1 | 0.0266 (2) | 0.0106 (2) | 0.0232 (2) | −0.00221 (8) | 0.00597 (15) | −0.00020 (8) |
| O1 | 0.0173 (10) | 0.0158 (10) | 0.0356 (13) | 0.0027 (8) | 0.0034 (9) | −0.0001 (9) |
| C1 | 0.0176 (11) | 0.0125 (12) | 0.0182 (13) | −0.0028 (9) | 0.0054 (10) | −0.0013 (9) |
| C2 | 0.0192 (12) | 0.0131 (12) | 0.0217 (13) | −0.0026 (10) | 0.0052 (10) | −0.0006 (10) |
| C3 | 0.0195 (13) | 0.0168 (13) | 0.0209 (13) | −0.0060 (10) | 0.0035 (11) | −0.0010 (10) |
| C4 | 0.0165 (11) | 0.0153 (12) | 0.0144 (11) | −0.0011 (9) | 0.0033 (9) | 0.0006 (9) |
| C5 | 0.0157 (11) | 0.0193 (13) | 0.0220 (13) | 0.0006 (10) | 0.0015 (10) | 0.0025 (10) |
| C6 | 0.0194 (12) | 0.0145 (12) | 0.0192 (13) | 0.0043 (10) | 0.0038 (10) | 0.0026 (10) |
| C7 | 0.0184 (12) | 0.0132 (11) | 0.0161 (12) | −0.0018 (9) | 0.0042 (10) | 0.0002 (9) |
| C8 | 0.0155 (11) | 0.0130 (13) | 0.0177 (13) | −0.0011 (9) | 0.0033 (10) | 0.0002 (9) |
| C9 | 0.0156 (11) | 0.0122 (11) | 0.0151 (11) | −0.0010 (9) | 0.0036 (9) | −0.0001 (9) |
| Br1—C7 | 1.907 (3) | C4—C5 | 1.398 (4) |
| O1—C1 | 1.216 (3) | C4—C9 | 1.401 (4) |
| C1—C9 | 1.483 (4) | C5—C6 | 1.392 (4) |
| C1—C2 | 1.529 (4) | C5—H5A | 0.95 |
| C2—C3 | 1.549 (4) | C6—C7 | 1.402 (4) |
| C2—H2A | 0.99 | C6—H6A | 0.95 |
| C2—H2B | 0.99 | C7—C8 | 1.386 (4) |
| C3—C4 | 1.510 (4) | C8—C9 | 1.400 (4) |
| C3—H3A | 0.99 | C8—H8A | 0.95 |
| C3—H3B | 0.99 | ||
| O1—C1—C9 | 126.1 (3) | C9—C4—C3 | 111.8 (2) |
| O1—C1—C2 | 126.6 (3) | C6—C5—C4 | 119.3 (3) |
| C9—C1—C2 | 107.3 (2) | C6—C5—H5A | 120.4 |
| C1—C2—C3 | 106.6 (2) | C4—C5—H5A | 120.4 |
| C1—C2—H2A | 110.4 | C5—C6—C7 | 120.4 (3) |
| C3—C2—H2A | 110.4 | C5—C6—H6A | 119.8 |
| C1—C2—H2B | 110.4 | C7—C6—H6A | 119.8 |
| C3—C2—H2B | 110.4 | C8—C7—C6 | 121.5 (3) |
| H2A—C2—H2B | 108.6 | C8—C7—Br1 | 119.5 (2) |
| C4—C3—C2 | 104.5 (2) | C6—C7—Br1 | 119.0 (2) |
| C4—C3—H3A | 110.9 | C7—C8—C9 | 117.3 (2) |
| C2—C3—H3A | 110.9 | C7—C8—H8A | 121.3 |
| C4—C3—H3B | 110.9 | C9—C8—H8A | 121.3 |
| C2—C3—H3B | 110.9 | C8—C9—C4 | 122.3 (2) |
| H3A—C3—H3B | 108.9 | C8—C9—C1 | 127.8 (2) |
| C5—C4—C9 | 119.2 (2) | C4—C9—C1 | 109.9 (2) |
| C5—C4—C3 | 129.0 (2) | ||
| O1—C1—C2—C3 | 179.0 (3) | Br1—C7—C8—C9 | −179.01 (19) |
| C9—C1—C2—C3 | −0.8 (3) | C7—C8—C9—C4 | −0.1 (4) |
| C1—C2—C3—C4 | 0.7 (3) | C7—C8—C9—C1 | 179.6 (3) |
| C2—C3—C4—C5 | 179.3 (3) | C5—C4—C9—C8 | −0.1 (4) |
| C2—C3—C4—C9 | −0.4 (3) | C3—C4—C9—C8 | 179.6 (2) |
| C9—C4—C5—C6 | 0.3 (4) | C5—C4—C9—C1 | −179.8 (2) |
| C3—C4—C5—C6 | −179.4 (3) | C3—C4—C9—C1 | −0.1 (3) |
| C4—C5—C6—C7 | −0.3 (4) | O1—C1—C9—C8 | 1.1 (5) |
| C5—C6—C7—C8 | 0.1 (4) | C2—C1—C9—C8 | −179.2 (3) |
| C5—C6—C7—Br1 | 179.2 (2) | O1—C1—C9—C4 | −179.2 (3) |
| C6—C7—C8—C9 | 0.0 (4) | C2—C1—C9—C4 | 0.6 (3) |
| H··· | ||||
| C3—H3 | 0.99 | 2.45 | 3.408 (4) | 162 |
| C5—H5 | 0.95 | 2.55 | 3.253 (4) | 131 |
| C2—H2 | 0.99 | 3.05 | 3.898 (3) | 145 |