| Literature DB >> 27833853 |
Bong-Kyu Kim1, Injung Kim1, Ah-Reum Lee1, Hye-In Yoo1, Sungjoo Kim Yoon1.
Abstract
MicroRNA (miRNA) are a class of single-stranded, small non-coding RNA that regulate various biological processes, including skin and hair cycle regulation, by modulating the expression of specific genes at the post-transcriptional level. Recently, several studies reported that miRNA directly or indirectly up-regulate target genes. Previously, we performed microarray analysis to identify the target genes of miR-199a-5p in a mouse skin keratinocyte cell line and detected more than 200 genes whose expression was significantly increased by miR-199a-5p overexpression (> 1.5-fold). In this study, we further investigated these genes and found that cyclin B1 (Ccnb1) expression was positively regulated by miR-199a-5p in keratinocyte. Moreover, Ccnb1 expression was inversely correlated with miR-199a-5p expression during the mouse hair cycle. Cell cycle analysis showed that the proportion of cells in S phase was slightly increased, while the proportion of cells in G2/M phase decreased by miR-199-5p. Using luciferase assay, we found that the 3' untranslated region of Ccnb1 was a direct target of miR-199a-5p. We also found that the regulation of Ccnb1 expression by miR-199a-5p is mouse specific. CCNB1 expression was not affected in the human and monkey cell lines. These results provide a new relationship between Ccnb1 and miR-199a-5p in both mouse keratinocyte and miRNA biology.Entities:
Keywords: Ccnb1; MiR‐199a‐5p; keratinocyte; miRNA
Year: 2016 PMID: 27833853 PMCID: PMC5095150 DOI: 10.1002/2211-5463.12133
Source DB: PubMed Journal: FEBS Open Bio ISSN: 2211-5463 Impact factor: 2.693
List of gene‐specific primers for real‐time PCR
| Genes | Accession number | Sequences | Size (bp) | Tm (°C) |
|---|---|---|---|---|
|
|
| F: tcagcagaccaaagactcaga | 163 | 60 |
| R: ggtgctgagtttggtcactg | ||||
|
|
| F: cttgccgagtgacttcaagg | 296 | 60 |
| R: ctgtcagcatgttttccaaagc | ||||
|
|
| F: ataatccctctccaagcccg | 299 | 60 |
| R: ggtctcctgaagcagcctaa | ||||
|
|
| F: agagtcactggccagatagt | 235 | 60 |
| R: aatccatgaactgcccagga | ||||
|
|
| F: tgaggaagagcaagcagtca | 216 | 60 |
| R: aacatggcagtgacaccaac | ||||
|
|
| F: ggccaaaatgcctatgaaga | 216 | 60 |
| R: gggcttggagagggagtatc | ||||
|
|
| F: aactttggcattgtggaagg | 223 | 60 |
| R: acacattgggggtaggaaca | ||||
|
|
| F: gagtcaacggatttggtcgt | 238 | 60 |
| R: ttgattttggagggatctcg | ||||
|
|
| F: cgagatccctccaaaatcaa | 205 | 60 |
| R: tgacgatcttgaggctgttg |
Figure 1Ccnb1 is a direct target gene of miR‐199a‐5p in mouse keratinocytes. (A–C) Validation of our previous microarray results using qRT‐PCR. Expression of (A) Mreg, (B) Krt23, and (C) Ccnb1 was increased in PAM212 cells overexpressing miR‐199a in miR‐199a‐5p. The data were normalized against mRNA expression. Results are the average of three independent experiments conducted in duplicate. (D–F) Results of dual luciferase reporter assays with constructs containing full‐length (D) Mreg, (E) Krt23, or (F) Ccnb1 3′ UTR mRNA expressed in PAM212 cells. Among the constructs tested, luciferase activity was significantly increased only in miR‐199a‐5p‐overexpessing cells cotransfected with the Ccnb1 construct. *P < 0.05; ***P < 0.001. NS, not significant.
Figure 2Expression of endogenous Ccnb1 is increased by miR‐199a‐5p both at the mRNA and protein levels. (A) miR‐199a‐5p up‐regulated Ccnb1 mRNA expression in PAM212 cells transfected with 25, 50, or 100 nm mimic. The data were normalized against GAPDH expression. Results are the average of three independent experiments conducted in duplicate. (B) Western blot analysis showed that the level of the CCNB1 protein was increased in PAM212 cells transfected with 50 or 100 nm miR‐199a‐5p mimic. β‐Actin was used as a loading control. (C) Quantitative analysis of western blots using imagej software (http://imagej.nih.gov/ij/index.html). The data were normalized against β‐actin expression. (D) Ccnb1 expression was significantly decreased by miR‐199a‐5p inhibitors. *P < 0.05; **P < 0.01; ***P < 0.001.
Figure 3Investigation of miR‐199a‐5p‐binding site in Ccnb1 3′ UTR. (A) Prediction of miR‐199a‐5p‐binding site in Ccnb1 3′ UTR using RNAhybrid. (B) Luciferase assay was revealed that deletion of prediction site in Ccnb1 3′ UTR was not affected by miR‐199a‐5p. Results are the average of three independent experiments conducted in duplicate. **P < 0.01.
Figure 4Expression of Ccnb1 during hair cycle and affection of cell cycle. (A, B) Relative expression of Ccnb1 mRNA and miR‐199a‐5p during the hair cycle measured by qRT‐PCR. Both Ccnb1 and miR‐199a‐5p were highly expressed during the anagen phases, and their expression decreased at telogen. The data were normalized against mRNA expression. Results are the average of skin RNA isolated from skin of three mice; experiments were conducted in duplicate. (C, D) Overexpression of miR‐199a‐5p slightly affected the S and G2/M phases of cell cycle in PAM212 cells. *P < 0.05; **P < 0.01; ***P < 0.001.
Figure 5Up‐regulation of Ccnb1 by miR‐199a‐5p is mouse species‐specific. (A–E) qRT‐PCR revealed that relative expression was not affected by miR‐199a‐5p overexpression in (A) HaCaT cells, (B) Colo320 DM, (C) SNU‐C5, and (D) Cos‐1 cells, whereas miR‐199a‐5p overexpression increased Ccnb1 expression in (E) 3T3‐L1 cells. The data were normalized against GAPDH mRNA expression. Results are the average of three independent experiments conducted in duplicate. (F) luciferase activity of Ccnb1 3′‐UTR was also significantly increased by miR‐199a‐5p overexpression in 3T3‐L1 cells. *P < 0.05; **P < 0.01; NS, not significant.
Figure 6Identification of the Ccnb1 3′ UTR region responsible for miR‐199a‐5p‐induced regulation of expression in the mouse. (A) Sequence alignment of Ccnb1 3′ UTRs from monkey, human, and mouse; the alignment was generated using clustalw (www.genome.jp/tools/clustalw). (B, C) Dual luciferase reporter assays with constructs containing the R1 or R2 region of the Ccnb1 3′‐UTR in (B) PAM212 and (C) 3T3‐L1 cells. In both cell types, miR‐199a‐5p only activated luciferase activity of the R2 region. In contrast, the R1 region was not regulated by miR‐199a‐5p. Results are the average of three independent experiments conducted in duplicate. **P < 0.01; ***P < 0.001; NS, not significant.
Figure 7The effect of miR‐199a‐5p to expression in rat C6 cell. qRT‐PCR revealed that expression was increased by miR‐199a‐5p in rat glial cell. Results are the average of three independent experiments. Results are the average of three independent experiments conducted in duplicate. ***P < 0.001.
Figure 8The effect of miR‐199a‐5p to Cdk1 expression. qRT‐PCR revealed that Cdk1 expression was increased by miR‐199a‐5p in mouse keratinocyte (A) and fibroblast (B). Results are the average of three independent experiments conducted in duplicate. *P < 0.05.
List of genes that involved in cell cycle and cell division process
| Cell cycle (50 genes) |
|
|
| Cell division (34 genes) |
|
|