| Literature DB >> 27833587 |
Seyed Alireza Dastgheib1, Alison Gartland2, Seyed Mohammad Bagher Tabei3, Gholamhossein Ranjbar Omrani4, Marion Dawn Teare5.
Abstract
The genetic epidemiology of variation in bone mineral density (BMD) and osteoporosis is not well studied in Iranian populations and needs more research. We report a candidate gene association study of BMD variation in a healthy cross-sectional study of 501 males and females sampled from the Iranian Multi-Centre Osteoporosis Study, Shiraz, Iran. We selected to study the association with 21 single nucleotide polymorphisms (SNPs) located in the 7 candidate genes LRP5, RANK, RANKL, OPG, P2RX7, VDR, and ESR1. BMD was measured at the three sites L2-L4, neck of femur, and total hip. Association between BMD and each SNP was assessed using multiple linear regression assuming an allele dose (additive effect) on BMD (adjusted for age and sex). Statistically significant (at the unadjusted 5% level) associations were seen with seven SNPs in five of the candidate genes. Two SNPs showed statistically significant association with more than one BMD site. Significant association was seen between BMD at all the three sites with the VDR SNP rs731246 (L2-L4 p = 0.038; neck of femur p = 0.001; and total hip p < 0.001). The T allele was consistently associated with lower BMD than the C allele. Significant association was also seen for the P2RX7 SNP rs3751143, where the G allele was consistently associated with lower BMD than the T allele (L2-L4 p = 0.069; neck of femur p = 0.024; and total hip p = 0.045).Entities:
Keywords: BMD; Iranian population; P2RX7; VDR; candidate gene association; genetic epidemiology
Year: 2016 PMID: 27833587 PMCID: PMC5081477 DOI: 10.3389/fendo.2016.00141
Source DB: PubMed Journal: Front Endocrinol (Lausanne) ISSN: 1664-2392 Impact factor: 5.555
Physical characteristics of both male and female study subjects.
| Statistical evaluation of the demographic characteristics of female and male subjects | ||||
|---|---|---|---|---|
| Variable | TotalMean (SD) Median (IQR) | Female Mean (SD) Median (IQR) | Male Mean (SD) Median (IQR) | |
| Age (years) | 47.5 (16.0) | 46.7 (15.7) | 48.3 (16.3) | 0.19 |
| 47.0 (35.0–59.5) | 47.0 (34.0–59.0) | 47.0 (37.0–60.0) | ||
| Height (cm) | 161.2 (9.6) | 154.5 (5.8) | 168.4 (7.4) | <0.001 |
| 160.0 (154.0–168) | 155.0 (151.0–159.0) | 168.0 (163.0–172.0) | ||
| Weight (kg) | 64.5 (11.8) | 62.2 (11.8) | 66.9 (11.4) | <0.001 |
| 64.0 (56.0–72.0) | 62.0 (54.0–70.3) | 66.5 (58.0–73.0) | ||
| BMI (kg/m2) | 24.8 (4.4) | 26.1 (4.6) | 23.6 (3.67) | <0.001 |
| 24.5 (21.5–27.6) | 26.0 (22.3–29.6) | 23.3 (20.1–25.9) | ||
The age, height, weight, and BMI of females and males were summarized and compared. The male subjects had lower BMI values compared to female subjects. N = 501, Group specific means are compared using Student’s t-test. IQR, interquartile range.
Summary of BMD measurements in participants.
| BMD of participants | ||||
|---|---|---|---|---|
| Variable | Total Mean (SD) Median (IQR) | Female Mean (SD) Median (IQR) | Male Mean (SD) Median (IQR) | |
| L2–L4_BMD | 1.031 (0.17) | 1.001 (0.17) | 1.060 (0.15) | <0.001 |
| 1.030 (0.93–1.14) | 1.030 (0.89–1.12) | 1.031 (0.94–1.17) | ||
| Neck_BMD | 0.870 (0.15) | 0.827 (0.14) | 0.918 (0.14) | <0.001 |
| 0.862 (0.77–0.96) | 0.821 (0.75–0.92) | 0.903 (0.81–1.00) | ||
| Total_BMD | 0.906 (0.15) | 0.864 (0.15) | 0.952 (0.13) | <0.001 |
| 0.904 (0.82–1.00) | 0.876 (0.79–0.95) | 0.938 (0.85–1.04) | ||
All BMD measurements are reported in mg/cm.
A summary of association between BMD and 21 selected SNPs.
| Summary of analysis by SNP and BMD site | |||
|---|---|---|---|
| SNP (gene) | Minor allele | Per allele (95% confidence interval) | |
| rs599083 (LRP5) | G | ||
| L2–L4 | −0.013 (−0.032 to 0.006) | 0.177 | |
| Neck | 0.001 (−0.014 to 0.016) | 0.868 | |
| Total hip | 0.003 (−0.012 to 0.018) | 0.732 | |
| rs3736228 (LRP5) | T | ||
| L2–L4 | −0.026 (−0.057 to 0.005) | 0.103 | |
| Neck | 0.008 (−0.016 to 0.033) | 0.503 | |
| Total hip | 0.014 (−0.011 to 0.039) | 0.269 | |
| rs884205 (RANK) | A | ||
| L2–L4 | −0.009 (−0.034 to 0.015) | 0.464 | |
| Neck | −0.016 (−0.036 to 0.003) | 0.101 | |
| Total hip | −0.020 (−0.040 to −0.001) | 0.042 | |
| Rs3018362 (RANK) | A | ||
| L2–L4 | −0.002 (−0.024 to 0.019) | 0.846 | |
| Neck | −0.004 (−0.021 to 0.013) | 0.655 | |
| Total hip | −0.005 (−0.022 to 0.012) | 0.555 | |
| rs9594738 (RANKL) | T | ||
| L2–L4 | 0.025 (0.004 to 0.047) | 0.019 | |
| Neck | 0.010 (−0.007 to 0.027) | 0.236 | |
| Total hip | 0.010 (−0.006 to 0.027) | 0.225 | |
| rs1021188 (RANKL) | C | ||
| L2–L4 | −0.019 (−0.046 to 0.008) | 0.161 | |
| Neck | −0.012 (−0.034 to 0.009) | 0.261 | |
| Total hip | −0.018 (−0.040 to 0.003) | 0.095 | |
| rs250463 (ESR1) | A | ||
| L2–L4 | 0.003 (−0.017 to 0.022) | 0.795 | |
| Neck | −0.001 (−0.020 to 0.014) | 0.860 | |
| Total hip | −0.006 (−0.021 to 0.010) | 0.465 | |
| rs1999805 (ESR1) | A | ||
| L2–L4 | −0.005 (−0.023 to 0.014) | 0.628 | |
| Neck | −0.002 (−0.016 to 0.013) | 0.819 | |
| Total hip | 0.004 (−0.010 to 0.019) | 0.567 | |
| Rs4870044 (ESR1) | T | ||
| L2–L4 | −0.001 (−0.020 to 0.021) | 0.935 | |
| Neck | 0.001 (−0.015 to 0.017) | 0.897 | |
| Total hip | −0.000 (−0.016 to 0.016) | 0.967 | |
| Rs1038304 ( | G | ||
| L2–L4 | 0.015 (−0.005 to 0.036) | 0.144 | |
| Neck | 0.012 (−0.004 to 0.028) | 0.141 | |
| Total hip | 0.016 (−0.001 to 0.032) | 0.062 | |
| Rs2941740 ( | G | ||
| L2–L4 | 0.013 (−0.007 to 0.034) | 0.203 | |
| Neck | 0.060 (−0.014 to 0.019) | 0.747 | |
| Total Hip | 0.006 (−0.010 to 0.023) | 0.448 | |
| Rs6929137 ( | A | ||
| L2–L4 | 0.020 (−0.000 to 0.041) | 0.054 | |
| Neck | 0.007 (−0.000 to 0.024) | 0.363 | |
| Total hip | 0.015 (−0.002 to 0.031) | 0.077 | |
| Rs7311236 ( | C | ||
| L2–L4 | 0.022 (0.001 to 0.043) | 0.038 | |
| Neck | 0.027 (0.011 to 0.044) | 0.001 | |
| Total hip | 0.029 (0.013 to 0.046) | < 0.001 | |
| Rs2228570 ( | C | ||
| L2–L4 | 0.014 (−0.007 to 0.036) | 0.195 | |
| Neck | 0.010 (−0.007 to 0.027) | 0.248 | |
| Total hip | 0.001 (−0.016 to 0.018) | 0.918 | |
| Rs3751143 (P2RX7) | G | ||
| L2–L4 | −0.021 (−0.043 to 0.002) | 0.069 | |
| Neck | −0.020 (−0.037 to −0.003) | 0.024 | |
| Total hip | −0.018 (−0.035 to 0.000) | 0.045 | |
| Rs28360457 ( | A | ||
| L2–L4 | 0.088 (−0.209 to 0.386) | 0.559 | |
| Neck | 0.078 (−0.156 to 0.312) | 0.511 | |
| Total hip | 0.073 (−0.164 to 0.310) | 0.547 | |
| Rs6469804 ( | A | ||
| L2–L4 | −0.023 (−0.043 to −0.003) | 0.026 | |
| Neck | −0.011 (−0.027 to 0.005) | 0.195 | |
| Total hip | −0.012 (−0.029 to 0.004) | 0.129 | |
| Rs4355801 ( | A | ||
| L2–L4 | −0.023 (−0.044 to −0.002) | 0.029 | |
| Neck | −0.010 (−0.026 to 0.007) | 0.240 | |
| Total hip | −0.013 (−0.029 to 0.003) | 0.119 | |
| Rs2062375 ( | G | ||
| L2–L4 | 0.012 (0.008 to 0.032) | 0.235 | |
| Neck | 0.004 (−0.012 to 0.020) | 0.638 | |
| Total hip | 0.002 (−0.013 to 0.018) | 0.761 | |
| Rs2062377 ( | T | ||
| L2–L4 | 0.017 (−0.004 to 0.037) | 0.118 | |
| Neck | 0.006 (−0.010 to 0.023) | 0.452 | |
| Total hip | 0.009 (−0.008 to 0.025) | 0.301 | |
| Rs11995824 ( | G | ||
| L2–L4 | −0.021 (−0.042 to −0.001) | 0.044 | |
| Neck | −0.011 (−0.027 to 0.006) | 0.199 | |
| Total hip | −0.013 (−0.029 to 0.005) | 0.125 | |
The association between BMD and the number of copies of the minor allele was analyzed using multiple linear regression with the BMD variable as the outcome, adjusting for the covariates age and sex of participant. For each linear regression analysis, the SNP genotype was coded as 0, 1, or 2 in terms of how many copies of the minor allele they carried. To illustrate the interpretation, consider two people with the same gender and age but with genotypes TT and CC at the SNP Rs7311236. The results of this analysis would predict the total hip BMD of the person with CC to be 0.068 units higher than the person with genotype TT.