| Literature DB >> 27833094 |
D Malani1, A Murumägi1, B Yadav1, M Kontro2, S Eldfors1, A Kumar1, R Karjalainen1, M M Majumder1, P Ojamies1, T Pemovska1, K Wennerberg1, C Heckman1, K Porkka2, M Wolf1, T Aittokallio1,3, O Kallioniemi1,4.
Abstract
We sought to identify drugs that could counteract cytarabine resistance in acute myeloid leukemia (AML) by generating eight resistant variants from MOLM-13 and SHI-1 AML cell lines by long-term drug treatment. These cells were compared with 66 ex vivo chemorefractory samples from cytarabine-treated AML patients. The models and patient cells were subjected to genomic and transcriptomic profiling and high-throughput testing with 250 emerging and clinical oncology compounds. Genomic profiling uncovered deletion of the deoxycytidine kinase (DCK) gene in both MOLM-13- and SHI-1-derived cytarabine-resistant variants and in an AML patient sample. Cytarabine-resistant SHI-1 variants and a subset of chemorefractory AML patient samples showed increased sensitivity to glucocorticoids that are often used in treatment of lymphoid leukemia but not AML. Paired samples taken from AML patients before treatment and at relapse also showed acquisition of glucocorticoid sensitivity. Enhanced glucocorticoid sensitivity was only seen in AML patient samples that were negative for the FLT3 mutation (P=0.0006). Our study shows that development of cytarabine resistance is associated with increased sensitivity to glucocorticoids in a subset of AML, suggesting a new therapeutic strategy that should be explored in a clinical trial of chemorefractory AML patients carrying wild-type FLT3.Entities:
Mesh:
Substances:
Year: 2016 PMID: 27833094 PMCID: PMC5420795 DOI: 10.1038/leu.2016.314
Source DB: PubMed Journal: Leukemia ISSN: 0887-6924 Impact factor: 11.528
Clinical characteristics of adult AML patients
| 1145 | Therapy-related AML | 1145_2 | Bone marrow | 41 | Diagnosis | 0 | Hyperdipo 43, t(5; 6), t(7; 9), −19, −20, −Y | – |
| 1145_3 | Bone marrow | 43 | Relapse | 15 | Cytarabine, azacitidine, allogenic HSCT | |||
| 1064 | Therapy-related AML | 1064_1 | Bone marrow | 37 | Diagnosis | 0 | abn(3) | – |
| 1064_3 | Bone marrow | 40 | First relapse | 30 | abn(3) | Cytarabine-antracycline, HSCT (MUD) | ||
| 3443 | AML without maturation | 3443_3 | Bone marrow | 21 | Resistant disease | 1 | del 17p, −2 (both), −17 (both), −5, −6, −7, −11, −12, −18, −22, +13,+21, 6–8 marker chromosomes | Cytarabine-antracycline |
| 3443_6 | Bone marrow | 22 | Resistant disease | 4 | As above, 8–12 marker chromosomes | Cytarabine-antracycline, ruxolitinib-everolimus, clofarabine-cytarabine |
Abbreviations: abn(3), abnormal chromosome 3; AML, acute myeloid leukemia; del, deletion; HSCT, hematopoietic stem cell transplantation; MUD, matched unrelated donor.
Figure 1Overview of the study design. (a) Schematic diagram illustrating generation of cytarabine-resistant cell line variants (upper panel) and collection of bone marrow mononuclear cells before and after cytarabine treatment in AML patients (middle panel). Subsequently, molecular profiling, high-throughput drug testing and bioinformatics data integration from cytarabine-resistant cell line variants and patient samples were studied (lower panel) to clinically validate the results. (b, c) The sensitivity of MOLM-13 and SHI-1 parental and cytarabine-resistant variants to cytarabine was tested with cell viability assay after 72 h incubation with drug concentrations ranging from 1 to 10 000 nM. The bars represent mean ±s.d.
Figure 2Molecular profiling of cytarabine-resistant cells revealed DCK deletion. (a) Genome-wide copy number analysis by exome sequencing was performed with 1280 Ara-C-resistant MOLM-13 and SHI-1 variants using respective parental cells as controls. Individual chromosomes are presented on the x axis and copy number ratios on the y axis. (b) Copy number analysis of AML patient samples 3443_3 (obtained before cytarabine treatment) and 3443_6 (obtained after cytarabine treatment) showed acquisition of homozygous deletion of DCK gene acquired after the patient was treated with two cycles of cytarabine-based therapy. (c, d) Microarray-based expression of DCK in MOLM-13 and SHI-1 parental and cytarabine-resistant variants.
Figure 3Nucleoside analogs showed stepwise co-resistance to cytarabine in AML cell lines and in an AML patient sample. (a) DSS for 250 drugs from individual MOLM-13 (Ai-Aiv) and SHI-1 (Av-Aviii) cytarabine-resistant variants were correlated with the corresponding parental cells to depict differential drug sensitivities and resistance patterns. DSS illustrates ex vivo sensitivity to the compound (high DSS meaning high sensitivity). Drugs showing co-resistance represented in black dots and vulnerabilities in black triangles in cytarabine-resistant variants compared with parental cells. (b, c) Cytarabine-resistant MOLM-13 and SHI-1 variants demonstrated consistent co-resistance pattern to nucleoside analogs by decreasing DSS values. Pearson correlation analysis was performed between cytarabine and individual nucleoside analogs; r indicated correlation values with P<0.05. (d) Comparison of DSS between AML patient samples 3443_3 and 3443_6 showed distinct pattern of co-resistance for nucleoside analogs, including cytarabine, gemcitabine, clofarabine and cladribine, shown in blue.
Figure 4Cytarabine-resistant SHI-1 cells exhibited enhanced sensitivity to glucocorticoids and upregulation of NR3C1. (a) SHI-1 parental and cytarabine-resistant variants showing sensitivity to three glucocorticoids—dexamethasone, methylprednisolone and prednisolone. (b) Correlation was calculated between DSS of cytarabine and individual glucocorticoids in SHI-1 cytarabine-resistant variants; r indicates Pearson correlation with P<0.05. (c, d, e) A targeted small-scale drug testing experiment was performed in SHI-1 parental and cytarabine-resistant variants to validate the high-throughput DSRT data on glucocorticoid sensitivity. Glucocorticoids were tested with nine doses in triplicates with same parameters as in the DSRT assay. The bars represent mean ±s.d. (f) TAS was calculated and correlated with gene expression profiles in SHI-1 parental and cytarabine-resistant variants; r indicates Spearman correlation, where P=0.02. (g) NR3C1 protein expression was analyzed using western blotting in SHI-1 parental and cytarabine-resistant cells. The integrated intensities of protein bands were quantified by Odyssey software and normalized against GAPDH.
Figure 5Enhanced efficacy to glucocorticoids in chemorefractory AML patient samples revealed by ex vivo drug testing. (a, b) The DSS of dexamethasone, methylprednisolone and prednisolone were compared between diagnostic and relapsed samples in 1064 and 1145 AML patient cases using two-tailed student's t-test. (c) The drug testing was performed with 66 relapsed and refractory samples from 48 AML patients treated with cytarabine containing chemotherapy. The DSS of dexamethasone, methylprednisolone and prednisolone were normalized against 15 healthy bone marrow samples and quantified as selective DSS. Each data point represents drug response from individual patient sample. (d) Dexamethasone responses were compared between AML patient samples carrying FLT3 wild-type (n=19) and point and/or ITD mutation (n=10) using Mann–Whitney U-test.