Literature DB >> 27830249

Efficient Results in Semantic Interoperability for Health Care. Findings from the Section on Knowledge Representation and Management.

L F Soualmia1, J Charlet.   

Abstract

OBJECTIVES: To summarize excellent current research in the field of Knowledge Representation and Management (KRM) within the health and medical care domain.
METHOD: We provide a synopsis of the 2016 IMIA selected articles as well as a related synthetic overview of the current and future field activities. A first step of the selection was performed through MEDLINE querying with a list of MeSH descriptors completed by a list of terms adapted to the KRM section. The second step of the selection was completed by the two section editors who separately evaluated the set of 1,432 articles. The third step of the selection consisted of a collective work that merged the evaluation results to retain 15 articles for peer-review.
RESULTS: The selection and evaluation process of this Yearbook's section on Knowledge Representation and Management has yielded four excellent and interesting articles regarding semantic interoperability for health care by gathering heterogeneous sources (knowledge and data) and auditing ontologies. In the first article, the authors present a solution based on standards and Semantic Web technologies to access distributed and heterogeneous datasets in the domain of breast cancer clinical trials. The second article describes a knowledge-based recommendation system that relies on ontologies and Semantic Web rules in the context of chronic diseases dietary. The third article is related to concept-recognition and text-mining to derive common human diseases model and a phenotypic network of common diseases. In the fourth article, the authors highlight the need for auditing the SNOMED CT. They propose to use a crowdbased method for ontology engineering.
CONCLUSIONS: The current research activities further illustrate the continuous convergence of Knowledge Representation and Medical Informatics, with a focus this year on dedicated tools and methods to advance clinical care by proposing solutions to cope with the problem of semantic interoperability. Indeed, there is a need for powerful tools able to manage and interpret complex, large-scale and distributed datasets and knowledge bases, but also a need for user-friendly tools developed for the clinicians in their daily practice.

Entities:  

Keywords:  Biomedical ontologies; information storage and retrieval; knowledge representation; vocabulary controlled

Mesh:

Year:  2016        PMID: 27830249      PMCID: PMC5171564          DOI: 10.15265/IY-2016-051

Source DB:  PubMed          Journal:  Yearb Med Inform        ISSN: 0943-4747


  23 in total

1.  The Unified Medical Language System (UMLS): integrating biomedical terminology.

Authors:  Olivier Bodenreider
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

Review 2.  Knowledge Representation and Management. From Ontology to Annotation. Findings from the Yearbook 2015 Section on Knowledge Representation and Management.

Authors:  J Charlet; S J Darmoni
Journal:  Yearb Med Inform       Date:  2015-08-13

3.  Knowledge representation and management: towards an integration of a semantic web in daily health practice.

Authors:  N Griffon; J Charlet; Sj Darmoni
Journal:  Yearb Med Inform       Date:  2013

4.  The Annotation and Image Mark-up project.

Authors:  David S Channin; Pattanasak Mongkolwat; Vladimir Kleper; Daniel L Rubin
Journal:  Radiology       Date:  2009-12       Impact factor: 11.105

5.  Ontology-based image navigation: exploring 3.0-T MR neurography of the brachial plexus using AIM and RadLex.

Authors:  Kenneth C Wang; Aditya R Salunkhe; James J Morrison; Pearlene P Lee; José L V Mejino; Landon T Detwiler; James F Brinkley; Eliot L Siegel; Daniel L Rubin; John A Carrino
Journal:  Radiographics       Date:  2015 Jan-Feb       Impact factor: 5.333

6.  Comparative analysis of a novel disease phenotype network based on clinical manifestations.

Authors:  Yang Chen; Xiang Zhang; Guo-Qiang Zhang; Rong Xu
Journal:  J Biomed Inform       Date:  2014-09-30       Impact factor: 6.317

7.  The Human Phenotype Ontology: Semantic Unification of Common and Rare Disease.

Authors:  Tudor Groza; Sebastian Köhler; Dawid Moldenhauer; Nicole Vasilevsky; Gareth Baynam; Tomasz Zemojtel; Lynn Marie Schriml; Warren Alden Kibbe; Paul N Schofield; Tim Beck; Drashtti Vasant; Anthony J Brookes; Andreas Zankl; Nicole L Washington; Christopher J Mungall; Suzanna E Lewis; Melissa A Haendel; Helen Parkinson; Peter N Robinson
Journal:  Am J Hum Genet       Date:  2015-06-25       Impact factor: 11.025

8.  Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data.

Authors:  Warren A Kibbe; Cesar Arze; Victor Felix; Elvira Mitraka; Evan Bolton; Gang Fu; Christopher J Mungall; Janos X Binder; James Malone; Drashtti Vasant; Helen Parkinson; Lynn M Schriml
Journal:  Nucleic Acids Res       Date:  2014-10-27       Impact factor: 16.971

9.  A multilayer ontology of instruments for neurological, behavioral and cognitive assessments.

Authors:  Bénédicte Batrancourt; Michel Dojat; Bernard Gibaud; Gilles Kassel
Journal:  Neuroinformatics       Date:  2015-01

10.  The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data.

Authors:  Sebastian Köhler; Sandra C Doelken; Christopher J Mungall; Sebastian Bauer; Helen V Firth; Isabelle Bailleul-Forestier; Graeme C M Black; Danielle L Brown; Michael Brudno; Jennifer Campbell; David R FitzPatrick; Janan T Eppig; Andrew P Jackson; Kathleen Freson; Marta Girdea; Ingo Helbig; Jane A Hurst; Johanna Jähn; Laird G Jackson; Anne M Kelly; David H Ledbetter; Sahar Mansour; Christa L Martin; Celia Moss; Andrew Mumford; Willem H Ouwehand; Soo-Mi Park; Erin Rooney Riggs; Richard H Scott; Sanjay Sisodiya; Steven Van Vooren; Ronald J Wapner; Andrew O M Wilkie; Caroline F Wright; Anneke T Vulto-van Silfhout; Nicole de Leeuw; Bert B A de Vries; Nicole L Washingthon; Cynthia L Smith; Monte Westerfield; Paul Schofield; Barbara J Ruef; Georgios V Gkoutos; Melissa Haendel; Damian Smedley; Suzanna E Lewis; Peter N Robinson
Journal:  Nucleic Acids Res       Date:  2013-11-11       Impact factor: 16.971

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  2 in total

Review 1.  Knowledge Representation and Management, It's Time to Integrate!

Authors:  F Dhombres; J Charlet
Journal:  Yearb Med Inform       Date:  2017-09-11

Review 2.  Surgical data science - from concepts toward clinical translation.

Authors:  Lena Maier-Hein; Matthias Eisenmann; Duygu Sarikaya; Keno März; Toby Collins; Anand Malpani; Johannes Fallert; Hubertus Feussner; Stamatia Giannarou; Pietro Mascagni; Hirenkumar Nakawala; Adrian Park; Carla Pugh; Danail Stoyanov; Swaroop S Vedula; Kevin Cleary; Gabor Fichtinger; Germain Forestier; Bernard Gibaud; Teodor Grantcharov; Makoto Hashizume; Doreen Heckmann-Nötzel; Hannes G Kenngott; Ron Kikinis; Lars Mündermann; Nassir Navab; Sinan Onogur; Tobias Roß; Raphael Sznitman; Russell H Taylor; Minu D Tizabi; Martin Wagner; Gregory D Hager; Thomas Neumuth; Nicolas Padoy; Justin Collins; Ines Gockel; Jan Goedeke; Daniel A Hashimoto; Luc Joyeux; Kyle Lam; Daniel R Leff; Amin Madani; Hani J Marcus; Ozanan Meireles; Alexander Seitel; Dogu Teber; Frank Ückert; Beat P Müller-Stich; Pierre Jannin; Stefanie Speidel
Journal:  Med Image Anal       Date:  2021-11-18       Impact factor: 13.828

  2 in total

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