| Literature DB >> 27830154 |
Mirsha Pamela Hernández-Rivera1, Alicia Ramírez-Ramírez2, Adelaido Chiñas-Pérez3, Amalia Monroy-Ostria1, Mario Eugenio Cancino-Díaz1, Omar Hernández-Montes1.
Abstract
Cutaneous leishmaniasis (CL) is endemic in Campeche state, Mexico. Host and parasite factors are involved in the establishment and development of CL. Host factors include immune response and genetic background. NRAMP1 (Natural Resistance Associated Macrophage Protein 1) is important in innate immunity. Polymorphisms in NRAMP1 have been associated with susceptibility or resistance to infectious and autoimmune diseases. To study the association of NRAMP1 mutations with CL in patients from Calakmul, Campeche, samples from 115 CL patients and 69 samples of healthy people from the same area were evaluated. Five regions in NRAMP1 were amplified and digested, looking for mutations in the promoter region (-524G/C), exon 3 (274C/T), exon 8 (823 C7T), and exon 15 (G/A) and deletion of 4 bp in the 3'UTR region. We found a statistical association between polymorphisms in 3'UTR region and exon 8 and CL [χ2 = 13.26; p < 0.05; OR = 17.00; IC of 95% (2.24-128.99)]. Some patients who needed more than 40 doses of Glucantime® to heal injuries presented mutations in exons 3, 8, and 15. Multiple or ear lesions were not associated with NRAMP1 polymorphism.Entities:
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Year: 2016 PMID: 27830154 PMCID: PMC5088330 DOI: 10.1155/2016/7951285
Source DB: PubMed Journal: Biomed Res Int Impact factor: 3.411
Primers used in this study.
| Polymorphisms | Primers |
|---|---|
| −524G/C | 5′-AAC AAC TCT GAG AAG GGA CA-3′ |
| 5′-TGT GCC CCA CAA CAC ATC TG-3′ | |
| 274C/T | 5′-TGC CAC CAT CCC TAT ACC CAG-3′ |
| 5′-TCT CGA AAG TGT CCC ACT CAG -3′ | |
| 823C/T | 5′-CTT GTC CTG ACC AGG CTC CT-3′ |
| 5′-CAT GGC TCC GAC TGA GTG AG-3′ | |
| D543N | 5′-GCA TCT CCC CAA TTC ATG GT-3′ |
| 1729 + 55del4 |
Details of the polymorphisms genotyped and identified by PCR-RFLP in NRAMP1.
| Polymorphisms | Localization | PCR product size | Restriction enzyme | Restriction enzyme products |
|---|---|---|---|---|
| −524G/C | Promoter region | 585 bp |
| Allele 1 (G): 43 (2), 61, 62, 79, 297 bp |
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| 274C/T | Exon 3 | 216 bp |
| Allele 1 (C): 12, 37, 65, 102 bp |
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| 823C/T | Exon 8 | 234 bp |
| Allele 1 (C): 99, 135 bp |
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| D543N | Exon 15 | 240/244 bp |
| Allele 1 (Asp): 39, 79, 122/126 bp |
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| 1729 + 55del4 | 3′UTR | 240/244 bp |
| Allele 1 (+TGTG): 33, 211 bp |
Genotype frequency of the NRAMP1 polymorphisms.
| Genotypes | CL (%) | Controls (%) |
| OR (95% CI) |
|---|---|---|---|---|
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| Promoter region −524 G/G | 115 (100) | 69 (100) | Not statistically significant | |
| Promoter region −524 G/C | 0 | 0 | ||
| Promoter region −524 C/C | 0 | 0 | ||
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| Exon 3 274 C/C | 48 (41.73) | 35 (50.72) | Not statistically significant | |
| Exon 3 274 C/T | 51 (44.34) | 27 (39.13) | ||
| Exon 3 274 T/T | 16 (13.91) | 7 (10.14) | ||
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| Exon 8 823 C/C | 92 (80) | 68 (98.55) | 13.26 | 17.00 (2.24–128.99) |
| Exon 8 823 C/T | 18 (15.65) | 1 (1.44) | ||
| Exon 8 823 T/T | 5 (4.34) | 0 | ||
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| Exon 15 D543N G/G | 75 (65.21) | 52 (75.36) | Not statistically significant | |
| Exon 15 D543N G/A | 40 (34.78) | 16 (23.18) | ||
| Exon 15 D543N A/A | 0 | 1 (1.44) | ||
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| 3′UTR TGTG/TGTG | 65 (56.52) | 54 (78.26) | 9.6 | 2.76 (1.40–5.46) |
| 3′UTR TGTG/del | 3 (2.6) | 0 | ||
| 3′UTR del/del | 47 (40.86) | 15 (21.73) | ||
χ 2 value = Chi-square value with p < 0.05 in the presence of the mutation and CL.
OR = odds ratio (95% confidence interval) presence of mutation is a risk for CL.
UTR = untranslated region. del = deletion.
Genotype frequency of the NRAMP1 polymorphisms in patients requiring high doses of Glucantime (HDG).
| Genotypes | CL-HDG (%) | CL (%) |
| OR (95% CI) |
|---|---|---|---|---|
| Exon 3 274 C/C | 2 (12.5) | 48 (41.73) | 22.69 | 3.94 (0.83–18.59) |
| Exon 3 274 C/T | 2 (12.5) | 51 (44.34) | ||
| Exon 3 274 T/T | 9 (69.23) | 16 (13.91) | ||
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| Exon 8 823 C/C | 9 (69.23) | 92 (80) | 15.43 | 1.77 (0.50–6.28) |
| Exon 8 823 C/T | 0 | 18 (15.65) | ||
| Exon 8 823 T/T | 4 (30.76) | 5 (4.34) | ||
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| Exon 15 D543N G/G | 10 (76.92) | 75 (65.21) | 31.75 | 0.56 (0.14–2.16) |
| Exon 15 D543N G/A | 0 | 40 (34.78) | ||
| Exon 15 D543N A/A | 3 (23.07) | 0 | ||
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| 3′UTR TGTG/TGTG | 8 (61.53) | 65 (56.52) | Not statistically significant | |
| 3′UTR TGTG/del | 0 | 3 (2.6) | ||
| 3′UTR del/del | 5 (38.46) | 47 (40.86) | ||
χ 2 value = Chi-square value with p < 0.05 in the presence of the mutation and requirement of high doses of Glucantime.
OR = odds ratio (95% confidence interval). UTR = untranslated region. del = deletion.