| Literature DB >> 27826491 |
Asya S Levina1, Marina N Repkova1, Elena V Bessudnova2, Ekaterina I Filippova3, Natalia A Mazurkova3, Valentina F Zarytova1.
Abstract
Background: The development of new antiviral drugs based on nucleic acids is under scrutiny. An important problem in this aspect is to find the most vulnerable conservative regions in the viral genome as targets for the action of these agents. Another challenge is the development of an efficient system for their delivery into cells. To solve this problem, we proposed a TiO2·PL-DNA nanocomposite consisting of titanium dioxide nanoparticles and polylysine (PL)-containing oligonucleotides.Entities:
Keywords: DNA fragments; H1N1, H5N1, and H3N2 subtypes of influenza A virus; TiO2·PL–DNA nanocomposites; conservative regions
Year: 2016 PMID: 27826491 PMCID: PMC5082348 DOI: 10.3762/bjnano.7.108
Source DB: PubMed Journal: Beilstein J Nanotechnol ISSN: 2190-4286 Impact factor: 3.649
Oligonucleotides aimed at different regions of influenza A virus segment 5.
| Sequence, 5’→3’ | Name | Targeted at | Position in segment 5a |
| GATTATCTACCCTGCTTTTGCp | DNA1 | 5’-noncoding region of (+)RNA | 2–22 |
| GCAAAAGCAGGGTAGATAATCpb | DNA5 | corresponding 3’-region of (−)RNA | |
| GAGACGCCATGATGTTGATGTCp | DNA2 | AUG region of (+)RNA | 34–54 |
| GACATCAACATCATGGCGTCTCp | DNA6 | corresponding region of (−)RNA | |
| CTCCGAAGAAATAAGATCCp | DNA3 | 3’-coding region of (+)RNA | 1498–1516 |
| GGATCTTATTTCTTCGGAGp | DNA7 | corresponding 5’-region of (−)RNA | |
| GTAGAAACAAGGGTATTTTTCp | DNA4 | 3’-noncoding region of (+)RNA | 1544–1564 |
| GAAAAATACCCTTGTTTCTACp | DNA8 | corresponding 5’-region of (−)RNA | |
| GATCAACTCCATATGCCATGTp | DNAr | random | – |
aNumbering of nucleotides are given for (+)RNA; bNanocomposite TiO2·PL–DNA containing this DNA fragment was used in previous works [18–19].
Figure 1Scheme of localization of the used DNA fragments on influenza A virus segment 5. AUG is the initiation codon for translation of the nucleoprotein gene.
Antiviral activity of the studied TiO2·PL–DNA nanocomposites. Virus titers and inhibition of virus reproduction (n-fold) in MDCK cells infected with different IAV subtypes after treating with nanocomposites bearing DNA fragments complementary to four conservative regions of (−)RNA and (+)RNA of segment 5.
| Sample | Targeted at | H1N1 | H3N2 | H5N1 | ||||
| Virus titer | ≈ | Virus titer | ≈ | Virus titer | ≈ | |||
| TCID50/mL | TCID50/mL | TCID50/mL | ||||||
| 1 | TiO2·PL–DNA1 | (+)RNA | 1413 | 80 | 19953 | 38 | 31623 | 35 |
| 2 | TiO2·PL–DNA2 | 398 | 300 | 3162 | 240 | 19953 | 60 | |
| 3 | TiO2·PL–DNA3 | 28184 | 4 | 891251 | 1 | 316228 | 4 | |
| 4 | TiO2·PL–DNA4 | 25119 | 4 | 794328 | 1 | 398107 | 3 | |
| 5 | TiO2·PL–DNA5 | (−)RNA | 112 | 1000 | 86 | 8900 | 251 | 4500 |
| 6 | TiO2·PL–DNA6 | 251 | 460 | 501 | 1500 | 2239 | 500 | |
| 7 | TiO2·PL–DNA7 | 794 | 150 | 1080 | 700 | 2512 | 450 | |
| 8 | TiO2·PL–DNA8 | 19953 | 6 | 25119 | 30 | 112202 | 10 | |
| 9 | TiO2·PL–NAr | controls | 15849 | 7 | 50119 | 15 | 199526 | 6 |
| 10 | TiO2 | – | – | 702583 | 1 | 1037884 | 1 | |
| 11 | TiO2·PL | – | – | 532753 | 1.4 | 781882 | 1.5 | |
| 12 | w/o sample | virus control | 116591 | 762957 | 1141563 | |||
Figure 2IAV titers in MDCK cells infected with H1N1, H3N2, and H5N1 IAV subtypes and treated with TiO2·PL–DNA nanocomposites containing DNA1–DNA8 fragments (columns 1–8, respectively). The location of these fragments on IAV strands can be seen in Figure 1. The nanoparticle concentration was 5 μg/mL and the DNA fragment concentration was 0.1 μM (20 nmol/mg). The values are mean values from three experiments. The results are given for the studied samples targeted to (a) (+)RNA and (b) (−)RNA.